From c18a02f6e07ad21fee5c7e6a1fc0e6f64efba17c Mon Sep 17 00:00:00 2001
From: Thomas White <taw@physics.org>
Date: Tue, 17 Mar 2015 17:26:07 +0100
Subject: Throw out crystals which could not be refined

---
 libcrystfel/src/stream.c | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

(limited to 'libcrystfel/src/stream.c')

diff --git a/libcrystfel/src/stream.c b/libcrystfel/src/stream.c
index 78ac9a40..abc08c06 100644
--- a/libcrystfel/src/stream.c
+++ b/libcrystfel/src/stream.c
@@ -842,7 +842,10 @@ int write_chunk(Stream *st, struct image *i, struct hdfile *hdfile,
 	}
 
 	for ( j=0; j<i->n_crystals; j++ ) {
-		ret = write_crystal(st, i->crystals[j], include_reflections);
+		if ( crystal_get_user_flag(i->crystals[j]) == 0 ) {
+			ret = write_crystal(st, i->crystals[j],
+			                    include_reflections);
+		}
 	}
 
 	fprintf(st->fh, CHUNK_END_MARKER"\n");
-- 
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