From d8af26290429aa6ffe1ba02c15a5392079edffb9 Mon Sep 17 00:00:00 2001
From: Thomas White <taw@physics.org>
Date: Tue, 3 Sep 2019 17:18:24 +0200
Subject: Force --no-check-peaks and --no-refine if pinkIndexer is used, and
 add a warning

---
 libcrystfel/src/index.c | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

(limited to 'libcrystfel')

diff --git a/libcrystfel/src/index.c b/libcrystfel/src/index.c
index 5a1673c3..a3479a6c 100644
--- a/libcrystfel/src/index.c
+++ b/libcrystfel/src/index.c
@@ -423,6 +423,29 @@ IndexingPrivate *setup_indexing(const char *method_list, UnitCell *cell,
 
 		if ( ipriv->engine_private[i] == NULL ) return NULL;
 
+		if ( methods[i] & INDEXING_PINKINDEXER ) {
+			if ( n > 1 ) {
+				ERROR("WARNING: Using PinkIndexer at the same "
+				      "time as other indexers is not "
+				      "recommended.\n");
+			}
+
+			if ( flags & INDEXING_CHECK_PEAKS ) {
+				ERROR("WARNING: Setting --no-check-peaks "
+				      "because PinkIndexer is in use.\n");
+			}
+			flags |= INDEXING_CHECK_PEAKS;
+			flags ^= INDEXING_CHECK_PEAKS;
+
+			if ( flags & INDEXING_REFINE ) {
+				ERROR("WARNING: Setting --no-refine because "
+				      "PinkIndexer is in use.\n");
+			}
+			flags |= INDEXING_REFINE;
+			flags ^= INDEXING_REFINE;
+		}
+
+
 		for ( j=0; j<i; j++ ) {
 			if ( methods[i] == methods[j] ) {
 				ERROR("Duplicate indexing method.\n");
-- 
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