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EXTRA_DIST = configure m4/gnulib-cache.m4 tests/first_merge_check \
	tests/second_merge_check tests/third_merge_check \
	tests/fourth_merge_check tests/first_merge_check.hkl \
	tests/third_merge_check.hkl tests/fourth_merge_check.hkl \
	src/cell.h src/hdf5-file.h src/image.h src/utils.h \
	src/diffraction.h src/detector.h src/reflist-utils.h \
	src/list_tmp.h src/statistics.h src/dw-hdfsee.h src/render.h \
	src/hdfsee.h src/dirax.h src/mosflm.h src/peaks.h src/index.h \
	src/filters.h src/diffraction-gpu.h src/cl-utils.h \
	src/symmetry.h src/povray.h src/index-priv.h src/geometry.h \
	src/render_hkl.h src/stream.h src/thread-pool.h \
	src/beam-parameters.h src/post-refinement.h src/hrs-scaling.h \
	src/reflist.h $(crystfel_DATA) doc/geometry.txt \
	doc/indexamajig.txt doc/pattern_sim.txt doc/process_hkl.txt \
	doc/symmetry.txt doc/twin-calculator.pdf doc/0-INDEX \
	doc/examples/lcls-dec.geom \
	doc/examples/lcls-june-r0013-r0128.geom \
	doc/examples/lcls-xpp-estimate.geom doc/examples/simple.geom \
	doc/examples/lcls-dec.beam doc/examples/lcls-june.beam \
	doc/examples/lcls-xpp-estimate.beam \
	doc/examples/cspad-feb2011.geom \
	doc/examples/lcls-cxi-9keV.beam scripts/check-near-bragg \
	scripts/random-image scripts/wibbletron scripts/create-mtz \
	scripts/mtz2hkl scripts/sequence-image scripts/zone-axes \
	scripts/alternate-stream scripts/README scripts/cell-please \
	scripts/check-hkl-completeness.gp scripts/check-hkl-quality.gp \
	scripts/compare-hkl.gp scripts/check-peak-detection
SUBDIRS = lib doc/reference
ACLOCAL_AMFLAGS = -I m4
AM_CFLAGS = -Wall
AM_CPPFLAGS = -DDATADIR=\""$(datadir)"\" -I$(top_builddir)/lib -I$(top_srcdir)/lib
LDADD = $(top_builddir)/lib/libgnu.a @IGNORE_UNUSED_LIBRARIES_CFLAGS@
src_pattern_sim_SOURCES = src/pattern_sim.c src/diffraction.c \
	src/utils.c src/image.c src/cell.c src/hdf5-file.c \
	src/detector.c src/peaks.c src/reflist-utils.c \
	src/beam-parameters.c src/symmetry.c src/thread-pool.c \
	src/reflist.c $(am__append_3)
@HAVE_OPENCL_TRUE@tests_gpu_sim_check_SOURCES = tests/gpu_sim_check.c src/utils.c \
@HAVE_OPENCL_TRUE@                              src/diffraction.c src/diffraction-gpu.c \
@HAVE_OPENCL_TRUE@                              src/thread-pool.c src/cell.c src/cl-utils.c \
@HAVE_OPENCL_TRUE@                              src/symmetry.c src/detector.c src/hdf5-file.c \
@HAVE_OPENCL_TRUE@                              src/image.c

src_process_hkl_SOURCES = src/process_hkl.c src/statistics.c \
                          src/cell.c src/utils.c \
                          src/symmetry.c src/stream.c src/beam-parameters.c \
                          src/thread-pool.c src/image.c src/detector.c \
                          src/hdf5-file.c src/reflist.c src/reflist-utils.c

src_indexamajig_SOURCES = src/indexamajig.c src/hdf5-file.c \
	src/utils.c src/cell.c src/image.c src/peaks.c src/index.c \
	src/filters.c src/diffraction.c src/detector.c src/dirax.c \
	src/mosflm.c src/reflist-utils.c src/symmetry.c src/geometry.c \
	src/thread-pool.c src/beam-parameters.c src/reflist.c \
	src/stream.c $(am__append_6)
@BUILD_HDFSEE_TRUE@src_hdfsee_SOURCES = src/hdfsee.c src/dw-hdfsee.c src/render.c \
@BUILD_HDFSEE_TRUE@                     src/hdf5-file.c src/utils.c src/image.c src/filters.c \
@BUILD_HDFSEE_TRUE@                     src/thread-pool.c src/detector.c

src_get_hkl_SOURCES = src/get_hkl.c src/cell.c src/utils.c \
                      src/reflist-utils.c src/symmetry.c src/beam-parameters.c \
                      src/thread-pool.c src/reflist.c

src_compare_hkl_SOURCES = src/compare_hkl.c src/cell.c src/utils.c \
                          src/reflist-utils.c src/statistics.c src/symmetry.c \
                          src/thread-pool.c src/reflist.c

src_check_hkl_SOURCES = src/check_hkl.c src/cell.c src/utils.c \
                        src/reflist-utils.c src/statistics.c src/symmetry.c \
                        src/thread-pool.c src/reflist.c

src_powder_plot_SOURCES = src/powder_plot.c src/cell.c src/utils.c src/image.c \
                          src/hdf5-file.c src/detector.c src/thread-pool.c \
                          src/beam-parameters.c

src_render_hkl_SOURCES = src/render_hkl.c src/cell.c src/reflist-utils.c \
                         src/utils.c src/povray.c src/symmetry.c src/render.c \
                         src/hdf5-file.c src/image.c src/filters.c \
                         src/thread-pool.c src/reflist.c src/detector.c

src_sum_stack_SOURCES = src/sum_stack.c src/utils.c src/hdf5-file.c \
                        src/image.c src/filters.c src/peaks.c src/detector.c \
                        src/cell.c src/thread-pool.c src/reflist.c

src_calibrate_detector_SOURCES = src/calibrate_detector.c src/utils.c \
                                 src/hdf5-file.c src/image.c src/thread-pool.c \
                                 src/detector.c src/stream.c src/cell.c \
                                 src/reflist-utils.c src/reflist.c src/symmetry.c \
                                 src/peaks.c 

src_partialator_SOURCES = src/partialator.c src/cell.c src/hdf5-file.c \
                          src/utils.c src/detector.c src/peaks.c src/image.c \
                          src/geometry.c src/reflist-utils.c src/stream.c \
                          src/thread-pool.c src/beam-parameters.c \
                          src/symmetry.c src/post-refinement.c \
                          src/hrs-scaling.c src/reflist.c

@BUILD_CUBEIT_TRUE@src_cubeit_SOURCES = src/cubeit.c src/cell.c src/hdf5-file.c src/utils.c \
@BUILD_CUBEIT_TRUE@                     src/detector.c src/render.c src/filters.c src/image.c \
@BUILD_CUBEIT_TRUE@                     src/symmetry.c src/stream.c src/thread-pool.c \
@BUILD_CUBEIT_TRUE@                     src/reflist.c src/reflist-utils.c

tests_list_check_SOURCES = tests/list_check.c src/reflist.c src/thread-pool.c \
                           src/utils.c

tests_integration_check_SOURCES = tests/integration_check.c src/peaks.c \
                                  src/reflist.c src/cell.c src/detector.c \
                                  src/thread-pool.c src/utils.c src/image.c \
                                  src/hdf5-file.c

INCLUDES = "-I$(top_srcdir)/data"
crystfeldir = $(datadir)/crystfel
crystfel_DATA = data/diffraction.cl data/defs.h data/hdfsee.ui
crystfeldocdir = $(docdir)
crystfeldoc_DATA = doc/geometry.txt doc/indexamajig.txt doc/pattern_sim.txt \
                   doc/process_hkl.txt doc/symmetry.txt \
                   doc/twin-calculator.pdf \
                   doc/0-INDEX doc/examples/lcls-dec.geom \
                   doc/examples/lcls-dec.beam \
                   doc/examples/lcls-june-r0013-r0128.geom \
                   doc/examples/lcls-june.beam \
                   doc/examples/lcls-xpp-estimate.geom \
                   doc/examples/lcls-xpp-estimate.beam \
                   doc/examples/simple.geom \
                   doc/examples/cspad-feb2011.geom \
                   doc/examples/lcls-cxi-9keV.beam

scriptdir = $(docdir)/scripts
script_DATA = scripts/check-near-bragg  scripts/random-image \
              scripts/wibbletron scripts/create-mtz scripts/mtz2hkl \
              scripts/sequence-image scripts/zone-axes \
              scripts/alternate-stream scripts/README scripts/cell-please \
              scripts/check-hkl-completeness.gp scripts/check-hkl-quality.gp \
              scripts/compare-hkl.gp scripts/check-peak-detection

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	here=`$(am__cd) $(top_builddir) && pwd` \
	  && $(am__cd) $(top_srcdir) \
	  && gtags -i $(GTAGS_ARGS) "$$here"

distclean-tags:
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check-TESTS: $(TESTS)
	@failed=0; all=0; xfail=0; xpass=0; skip=0; \
	srcdir=$(srcdir); export srcdir; \
	list=' $(TESTS) '; \
	$(am__tty_colors); \
	if test -n "$$list"; then \
	  for tst in $$list; do \
	    if test -f ./$$tst; then dir=./; \
	    elif test -f $$tst; then dir=; \
	    else dir="$(srcdir)/"; fi; \
	    if $(TESTS_ENVIRONMENT) $${dir}$$tst; then \
	      all=`expr $$all + 1`; \
	      case " $(XFAIL_TESTS) " in \
	      *[\ \	]$$tst[\ \	]*) \
		xpass=`expr $$xpass + 1`; \
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		col=$$red; res=XPASS; \
	      ;; \
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	      ;; \
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	    elif test $$? -ne 77; then \
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		col=$$lgn; res=XFAIL; \
	      ;; \
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	    else \
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	      col=$$blu; res=SKIP; \
	    fi; \
	    echo "$${col}$$res$${std}: $$tst"; \
	  done; \
	  if test "$$all" -eq 1; then \
	    tests="test"; \
	    All=""; \
	  else \
	    tests="tests"; \
	    All="All "; \
	  fi; \
	  if test "$$failed" -eq 0; then \
	    if test "$$xfail" -eq 0; then \
	      banner="$$All$$all $$tests passed"; \
	    else \
	      if test "$$xfail" -eq 1; then failures=failure; else failures=failures; fi; \
	      banner="$$All$$all $$tests behaved as expected ($$xfail expected $$failures)"; \
	    fi; \
	  else \
	    if test "$$xpass" -eq 0; then \
	      banner="$$failed of $$all $$tests failed"; \
	    else \
	      if test "$$xpass" -eq 1; then passes=pass; else passes=passes; fi; \
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	    fi; \
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	      skipped="($$skip test was not run)"; \
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	      skipped="($$skip tests were not run)"; \
	    fi; \
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	    test `echo "$$report" | wc -c` -le `echo "$$banner" | wc -c` || \
	      dashes="$$report"; \
	  fi; \
	  dashes=`echo "$$dashes" | sed s/./=/g`; \
	  if test "$$failed" -eq 0; then \
	    echo "$$grn$$dashes"; \
	  else \
	    echo "$$red$$dashes"; \
	  fi; \
	  echo "$$banner"; \
	  test -z "$$skipped" || echo "$$skipped"; \
	  test -z "$$report" || echo "$$report"; \
	  echo "$$dashes$$std"; \
	  test "$$failed" -eq 0; \
	else :; fi

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	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
	case $$dist_files in \
	  */*) $(MKDIR_P) `echo "$$dist_files" | \
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	    if test -d "$(distdir)/$$file"; then \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
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	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
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	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
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	    test -f "$(distdir)/$$file" \
	    || cp -p $$d/$$file "$(distdir)/$$file" \
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	done
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	    || $(MKDIR_P) "$(distdir)/$$subdir" \
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	  fi; \
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	    dir1=$$subdir; dir2="$(distdir)/$$subdir"; \
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	    dir1=$$subdir; dir2="$(top_distdir)"; \
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	    ($(am__cd) $$subdir && \
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	-test -n "$(am__skip_mode_fix)" \
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	  ! -type d ! -perm -444 -exec $(install_sh) -c -m a+r {} {} \; \
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	tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
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dist-bzip2: distdir
	tardir=$(distdir) && $(am__tar) | bzip2 -9 -c >$(distdir).tar.bz2
	$(am__remove_distdir)

dist-lzma: distdir
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dist-xz: distdir
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dist-tarZ: distdir
	tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
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dist-shar: distdir
	shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
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dist-zip: distdir
	-rm -f $(distdir).zip
	zip -rq $(distdir).zip $(distdir)
	$(am__remove_distdir)

dist dist-all: distdir
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# This target untars the dist file and tries a VPATH configuration.  Then
# it guarantees that the distribution is self-contained by making another
# tarfile.
distcheck: dist
	case '$(DIST_ARCHIVES)' in \
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	  GZIP=$(GZIP_ENV) gzip -dc $(distdir).tar.gz | $(am__untar) ;;\
	*.tar.bz2*) \
	  bzip2 -dc $(distdir).tar.bz2 | $(am__untar) ;;\
	*.tar.lzma*) \
	  lzma -dc $(distdir).tar.lzma | $(am__untar) ;;\
	*.tar.xz*) \
	  xz -dc $(distdir).tar.xz | $(am__untar) ;;\
	*.tar.Z*) \
	  uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
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	*.zip*) \
	  unzip $(distdir).zip ;;\
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	chmod -R a-w $(distdir); chmod a+w $(distdir)
	mkdir $(distdir)/_build
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	test -d $(distdir)/_build || exit 0; \
	dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
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	  && $(am__cd) $(distdir)/_build \
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	  && $(MAKE) $(AM_MAKEFLAGS) dvi \
	  && $(MAKE) $(AM_MAKEFLAGS) check \
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	  && $(MAKE) $(AM_MAKEFLAGS) installcheck \
	  && $(MAKE) $(AM_MAKEFLAGS) uninstall \
	  && $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" \
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	  && chmod -R a-w "$$dc_install_base" \
	  && ({ \
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	       && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
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	       && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
	            distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
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	  && $(MAKE) $(AM_MAKEFLAGS) dist \
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	  && $(MAKE) $(AM_MAKEFLAGS) distcleancheck \
	  && cd "$$am__cwd" \
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	  list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
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distuninstallcheck:
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	        fi ; \
	        $(distuninstallcheck_listfiles) ; \
	        exit 1; } >&2
distcleancheck: distclean
	@if test '$(srcdir)' = . ; then \
	  echo "ERROR: distcleancheck can only run from a VPATH build" ; \
	  exit 1 ; \
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	@test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
	  || { echo "ERROR: files left in build directory after distclean:" ; \
	       $(distcleancheck_listfiles) ; \
	       exit 1; } >&2
check-am: all-am
	$(MAKE) $(AM_MAKEFLAGS) check-TESTS
check: check-recursive
all-am: Makefile $(PROGRAMS) $(DATA) config.h
installdirs: installdirs-recursive
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	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
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install-exec: install-exec-recursive
install-data: install-data-recursive
uninstall: uninstall-recursive

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-recursive
install-strip:
	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	  `test -z '$(STRIP)' || \
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mostlyclean-generic:

clean-generic:

distclean-generic:
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	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
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maintainer-clean-generic:
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clean: clean-recursive

clean-am: clean-binPROGRAMS clean-generic clean-noinstPROGRAMS \
	mostlyclean-am

distclean: distclean-recursive
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	-rm -rf src/$(DEPDIR) tests/$(DEPDIR)
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dvi: dvi-recursive

dvi-am:

html: html-recursive

html-am:

info: info-recursive

info-am:

install-data-am: install-crystfelDATA install-crystfeldocDATA \
	install-scriptDATA

install-dvi: install-dvi-recursive

install-dvi-am:

install-exec-am: install-binPROGRAMS

install-html: install-html-recursive

install-html-am:

install-info: install-info-recursive

install-info-am:

install-man:

install-pdf: install-pdf-recursive

install-pdf-am:

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install-ps-am:

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mostlyclean: mostlyclean-recursive

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pdf: pdf-recursive

pdf-am:

ps: ps-recursive

ps-am:

uninstall-am: uninstall-binPROGRAMS uninstall-crystfelDATA \
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.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) all check-am \
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.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
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	install-crystfeldocDATA install-data install-data-am \
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# Tell versions [3.59,3.63) of GNU make to not export all variables.
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