/* * stream.h * * Stream tools * * Copyright © 2013-2017 Deutsches Elektronen-Synchrotron DESY, * a research centre of the Helmholtz Association. * * Authors: * 2010-2017 Thomas White * 2014 Valerio Mariani * 2011 Andrew Aquila * * This file is part of CrystFEL. * * CrystFEL is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * CrystFEL is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with CrystFEL. If not, see . * */ #ifndef STREAM_H #define STREAM_H #ifdef HAVE_CONFIG_H #include #endif struct image; struct hdfile; struct event; struct imagefile; #include "cell.h" #define GEOM_START_MARKER "----- Begin geometry file -----" #define GEOM_END_MARKER "----- End geometry file -----" #define CELL_START_MARKER "----- Begin unit cell -----" #define CELL_END_MARKER "----- End unit cell -----" #define CHUNK_START_MARKER "----- Begin chunk -----" #define CHUNK_END_MARKER "----- End chunk -----" #define PEAK_LIST_START_MARKER "Peaks from peak search" #define PEAK_LIST_END_MARKER "End of peak list" #define CRYSTAL_START_MARKER "--- Begin crystal" #define CRYSTAL_END_MARKER "--- End crystal" #define REFLECTION_START_MARKER "Reflections measured after indexing" /* REFLECTION_END_MARKER is over in reflist-utils.h because it is also * used to terminate a standalone list of reflections */ typedef struct _stream Stream; /** * StreamReadFlags: * @STREAM_READ_UNITCELL: Read the unit cell * @STREAM_READ_REFLECTIONS: Read the integrated reflections * @STREAM_READ_PEAKS: Read the peak search results * @STREAM_READ_CRYSTALS: Read the general information about crystals * * A bitfield of things that can be read from a stream. Use this (and * read_chunk_2()) to read the stream faster if you don't need the entire * contents of the stream. * * Using either or both of @STREAM_READ_REFLECTIONS and @STREAM_READ_UNITCELL * implies @STREAM_READ_CRYSTALS. **/ typedef enum { STREAM_READ_UNITCELL = 1, STREAM_READ_REFLECTIONS = 2, STREAM_READ_PEAKS = 4, STREAM_READ_CRYSTALS = 8, } StreamReadFlags; struct stuff_from_stream { char **fields; int n_fields; }; #ifdef __cplusplus extern "C" { #endif extern Stream *open_stream_for_read(const char *filename); extern Stream *open_stream_for_write(const char *filename); extern Stream *open_stream_for_write_2(const char *filename, const char* geom_filename, int argc, char *argv[]); extern Stream *open_stream_for_write_3(const char *filename, const char* geom_filename, UnitCell *cell, int argc, char *argv[]); extern Stream *open_stream_fd_for_write(int fd); extern int get_stream_fd(Stream *st); extern void close_stream(Stream *st); extern int read_chunk(Stream *st, struct image *image); extern int read_chunk_2(Stream *st, struct image *image, StreamReadFlags srf); extern int write_chunk(Stream *st, struct image *image, struct imagefile *imfile, int include_peaks, int include_reflections, struct event *ev); extern int write_chunk_2(Stream *st, struct image *image, struct imagefile *imfile, int include_peaks, int include_reflections, struct event *ev); extern void write_command(Stream *st, int argc, char *argv[]); extern void write_geometry_file(Stream *st, const char *geom_filename); extern int rewind_stream(Stream *st); extern int is_stream(const char *filename); #ifdef __cplusplus } #endif #endif /* STREAM_H */