/* * gui_project.h * * GUI project persistence * * Copyright © 2020 Deutsches Elektronen-Synchrotron DESY, * a research centre of the Helmholtz Association. * * Authors: * 2020 Thomas White * * This file is part of CrystFEL. * * CrystFEL is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * CrystFEL is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with CrystFEL. If not, see . * */ #ifndef GUI_PROJECT_H #define GUI_PROJECT_H #include #include #include #define MAX_RUNNING_TASKS (16) enum match_type_id { MATCH_EVERYTHING, MATCH_H5, MATCH_CHEETAH_LCLS_H5, MATCH_CHEETAH_CXI, MATCH_CBF, MATCH_CBFGZ, }; struct peak_params { enum peak_search_method method; float threshold; /* zaef, pf8 */ float min_sq_gradient; /* zaef */ float min_snr; /* zaef, pf8 */ int min_pix_count; /* pf8 */ int max_pix_count; /* pf8 */ int local_bg_radius; /* pf8 */ int min_res; /* pf8 */ int max_res; /* pf8 */ float min_snr_biggest_pix; /* pf9 */ float min_snr_peak_pix; /* pf9 */ float min_sig; /* pf9 */ float min_peak_over_neighbour; /* pf9 */ float pk_inn; float pk_mid; float pk_out; int half_pixel_shift; /* cxi, hdf5 */ int revalidate; }; struct index_params { /* Indexing */ char *cell_file; char *indexing_methods; int multi; int no_refine; int no_retry; int no_peak_check; int no_cell_check; float tols[6]; int min_peaks; /* Integration */ char *integration_method; int overpredict; float push_res; float ir_inn; float ir_mid; float ir_out; /* Stream output */ int exclude_nonhits; int exclude_peaks; int exclude_refls; char **metadata_to_copy; int n_metadata; }; struct merging_params { char *model; /* "process_hkl" in addition to xsphere/unity etc */ char *symmetry; int scale; int bscale; int postref; int niter; char *polarisation; int deltacchalf; int min_measurements; float max_adu; char *custom_split; char *twin_sym; float min_res; float push_res; }; struct ambi_params { int use_res; double res_min; /* Angstroms */ double res_max; /* Angstroms */ int niter; int use_ncorr; int ncorr; char *sym; char *source_sym; int use_operator; char *operator; }; struct gui_indexing_result { char *name; int n_streams; char **streams; StreamIndex **indices; }; struct gui_merge_result { char *name; char *hkl; /* Complete merged data */ char *hkl1; /* First half-split */ char *hkl2; /* Second half-split */ }; struct crystfelproject; struct crystfel_backend { const char *name; const char *friendly_name; /* Called to ask the backend to cancel the job */ void (*cancel_task)(void *job_priv); /* Called to get the status of a task */ int (*task_status)(void *job_priv, int *running, float *fraction_complete); /* ....................... Indexing ........................ */ /* Backend should provide a GTK widget to set options */ GtkWidget *(*make_indexing_parameters_widget)(void *opts_priv); /* Called to ask the backend to start indexing frames. * It should return a void pointer representing this job */ void *(*run_indexing)(const char *job_title, const char *job_notes, struct crystfelproject *proj, void *opts_priv); /* Called to ask the backend to write its indexing options */ void (*write_indexing_opts)(void *opts_priv, FILE *fh); /* Called when reading a project from file */ void (*read_indexing_opt)(void *opts_priv, const char *key, const char *val); /* Backend should store options for indexing here */ void *indexing_opts_priv; /* ....................... Merging ........................ */ /* Backend should provide a GTK widget to set options */ GtkWidget *(*make_merging_parameters_widget)(void *opts_priv); /* Called to ask the backend to start merging data. * It should return a void pointer representing this job */ void *(*run_merging)(const char *job_title, const char *job_notes, struct crystfelproject *proj, struct gui_indexing_result *input, void *opts_priv); /* Called to ask the backend to write its merging options */ void (*write_merging_opts)(void *opts_priv, FILE *fh); /* Called when reading a project from file */ void (*read_merging_opt)(void *opts_priv, const char *key, const char *val); /* Backend should store options for merging here */ void *merging_opts_priv; /* .................. Indexing ambiguity .................. */ /* Backend should provide a GTK widget to set options */ GtkWidget *(*make_ambi_parameters_widget)(void *opts_priv); /* Called to ask the backend to start resolving indexing ambiguity. * It should return a void pointer representing this job */ void *(*run_ambi)(const char *job_title, const char *job_notes, struct crystfelproject *proj, struct gui_indexing_result *input, void *opts_priv); /* Called to ask the backend to write its ambigator options */ void (*write_ambi_opts)(void *opts_priv, FILE *fh); /* Called when reading a project from file */ void (*read_ambi_opt)(void *opts_priv, const char *key, const char *val); /* Backend should store options for ambigator here */ void *ambi_opts_priv; }; struct gui_task { GtkWidget *info_bar; GtkWidget *cancel_button; GtkWidget *progress_bar; int running; struct crystfel_backend *backend; void *job_priv; }; struct crystfelproject { GtkWidget *window; GtkUIManager *ui; GtkActionGroup *action_group; GtkWidget *imageview; GtkWidget *icons; /* Drawing area for task icons */ GtkWidget *report; /* Text view at the bottom for messages */ GtkWidget *main_vbox; GtkWidget *image_info; GtkWidget *results_combo; GtkWidget *next_button; GtkWidget *prev_button; GtkWidget *first_button; GtkWidget *last_button; int unsaved; int cur_frame; struct image *cur_image; char *geom_filename; char *stream_filename; char *data_top_folder; /* For convenience only. Filenames in * 'filenames' list should be complete */ enum match_type_id data_search_pattern; DataTemplate *dtempl; int n_frames; int max_frames; char **filenames; char **events; int show_peaks; struct peak_params peak_search_params; int show_refls; int label_refls; struct index_params indexing_params; int indexing_backend_selected; GtkWidget *indexing_opts; char *indexing_new_job_title; struct merging_params merging_params; int merging_backend_selected; GtkWidget *merging_opts; char *merging_new_job_title; GtkWidget *type_combo; GtkWidget *peak_vbox; /* Box for peak search parameter widgets */ GtkWidget *peak_params; /* Peak search parameter widgets */ struct peak_params original_params; /* All the backends available in this project */ struct crystfel_backend *backends; int n_backends; struct gui_task tasks[MAX_RUNNING_TASKS]; int n_running_tasks; struct gui_indexing_result *results; int n_results; struct gui_merge_result *merge_results; int n_merge_results; double fom_res_min; /* Angstroms */ double fom_res_max; /* Angstroms */ int fom_nbins; double fom_min_snr; int fom_min_meas; char *fom_cell_filename; double export_res_min; /* Angstroms */ double export_res_max; /* Angstroms */ char *ambi_new_job_title; int ambi_backend_selected; GtkWidget *ambi_opts; struct ambi_params ambi_params; }; extern enum match_type_id decode_matchtype(const char *type_id); extern int match_filename(const char *fn, enum match_type_id mt); extern int load_project(struct crystfelproject *proj); extern void default_project(struct crystfelproject *proj); extern int save_project(struct crystfelproject *proj); extern void add_file_to_project(struct crystfelproject *proj, const char *filename, const char *event); extern void clear_project_files(struct crystfelproject *proj); extern void clear_indexing_results(struct crystfelproject *proj); extern int add_indexing_result(struct crystfelproject *proj, char *name, char **streams, int n_streams); extern struct image *find_indexed_image(struct crystfelproject *proj, const char *result_name, const char *filename, const char *event, int permit_rescan); extern void update_result_index(struct gui_indexing_result *result); extern struct gui_indexing_result *find_indexing_result_by_name(struct crystfelproject *proj, const char *name); extern int add_merge_result(struct crystfelproject *proj, char *name, char *hkl, char *hkl1, char *hkl2); extern struct gui_merge_result *find_merge_result_by_name(struct crystfelproject *proj, const char *name); extern const char *selected_result(struct crystfelproject *proj); #endif