/* * render_hkl.c * * Draw pretty renderings of reflection lists * * (c) 2006-2010 Thomas White * * Part of CrystFEL - crystallography with a FEL * */ #ifdef HAVE_CONFIG_H #include #endif #include #include #include #include #include #include #include #include #include #include #include "utils.h" #include "reflections.h" #define MAX_PROC (256) static void show_help(const char *s) { printf("Syntax: %s [options] \n\n", s); printf( "Render intensity lists using POV-ray.\n" "\n" " -h, --help Display this help message.\n" " --povray Render a 3D animation using POV-ray.\n" " --zone-axis Render a 2D zone axis pattern.\n" " -j Run instances of POV-ray in parallel.\n" " -p, --pdb= PDB file from which to get the unit cell.\n" ); } static void render_za(UnitCell *cell, double *ref, unsigned int *c) { cairo_surface_t *surface; cairo_t *dctx; double max_u, max_v, max_res, max_intensity, scale; double sep_u, sep_v, max_r; double as, bs, theta; double asx, asy, asz; double bsx, bsy, bsz; double csx, csy, csz; signed int h, k; float wh, ht; wh = 1024; ht = 1024; surface = cairo_pdf_surface_create("za.pdf", wh, ht); if ( cairo_surface_status(surface) != CAIRO_STATUS_SUCCESS ) { fprintf(stderr, "Couldn't create Cairo surface\n"); cairo_surface_destroy(surface); return; } dctx = cairo_create(surface); /* Black background */ cairo_rectangle(dctx, 0.0, 0.0, wh, ht); cairo_set_source_rgb(dctx, 0.0, 0.0, 0.0); cairo_fill(dctx); max_u = 0.0; max_v = 0.0; max_intensity = 0.0; max_res = 0.0; /* Work out reciprocal lattice spacings and angles for this cut */ cell_get_reciprocal(cell, &asx, &asy, &asz, &bsx, &bsy, &bsz, &csx, &csy, &csz); theta = angle_between(asx, asy, asz, bsx, bsy, bsz); as = modulus(asx, asy, asz) / 1e9; bs = modulus(bsx, bsy, bsz) / 1e9; STATUS("theta=%f\n", rad2deg(theta)); for ( h=-INDMAX; h max_res ) max_res = res; if ( intensity != 0 ) { u = (double)h*as*sin(theta); v = (double)h*as*cos(theta) + k*bs; if ( fabs(u) > fabs(max_u) ) max_u = fabs(u); if ( fabs(v) > fabs(max_v) ) max_v = fabs(v); if ( fabs(intensity) > fabs(max_intensity) ) max_intensity = fabs(intensity); } } } max_res /= 1e9; max_u /= 0.5; max_v /= 0.5; printf("Maximum resolution is %f nm^-1\n", max_res); if ( max_intensity <= 0.0 ) { max_r = 4.0; goto out; } /* Choose whichever scaling factor gives the smallest value */ scale = ((double)wh-50.0) / (2*max_u); if ( ((double)ht-50.0) / (2*max_v) < scale ) { scale = ((double)ht-50.0) / (2*max_v); } sep_u = as * scale * cos(theta); sep_v = bs * scale; max_r = ((sep_u < sep_v)?sep_u:sep_v); for ( h=-INDMAX; h= 0) & (clock <= 124) )\n"); fprintf(fh, "camera { location <0.0, -3.0, 0.0>" " sky z direction 1.1*y\n" " right -x*(image_width/image_height)\n" " look_at <0.0, 0.0, 0.0> }\n\n"); fprintf(fh, "#end\n"); /* Second quarter */ fprintf(fh, "#if ( (clock >= 125) & (clock <= 249) )\n"); fprintf(fh, "camera { location <0.0," " -(2.0+cos(radians((clock-125)*(180/125)))), 0.0>" " sky z direction 1.1*y\n" " right -x*(image_width/image_height)\n" " look_at <0.0, 0.0, 0.0> }\n\n"); fprintf(fh, "#end\n"); /* Third quarter */ fprintf(fh, "#if ( (clock >= 250) & (clock <= 374) )\n"); fprintf(fh, "camera { location <0.0, -1.0, 0.0>" " sky z direction 1.1*y\n" " right -x*(image_width/image_height)\n" " look_at <0.0, 0.0, 0.0> }\n\n"); fprintf(fh, "#end\n"); /* Fourth quarter */ fprintf(fh, "#if ( (clock >= 375) & (clock <= 500) )\n"); fprintf(fh, "camera { location <0.0," " -(2.0+cos(radians((clock-375)*(180/125)+180))), 0.0>" " sky z direction 1.1*y\n" " right -x*(image_width/image_height)\n" " look_at <0.0, 0.0, 0.0> }\n\n"); fprintf(fh, "#end\n"); fprintf(fh, "light_source { <-3.0 -3.0 3.0> White }\n"); fprintf(fh, "light_source { <+3.0 -3.0 3.0> White }\n"); fprintf(fh, "light_source { <0.0, -3.0, 0.0> 2*White }\n"); fprintf(fh, "plane {z,-2.0 pigment { rgb <0.0, 0.0, 0.1> } }\n"); fprintf(fh, "plane {-z,-2.0 pigment { rgb <0.0, 0.0, 0.05> } }\n\n"); cell_get_reciprocal(cell, &asx, &asy, &asz, &bsx, &bsy, &bsz, &csx, &csy, &csz); fprintf(fh, "#declare WCA = (720/19);\n"); fprintf(fh, "#declare WCL = (360/8.5);\n"); fprintf(fh, "#declare TA = (4.875);\n"); fprintf(fh, "#declare TB = (1.125);\n"); fprintf(fh, "#declare TRANS = \n"); fprintf(fh, "transform {\n"); /* First half */ /* Acceleration */ fprintf(fh, "#if ( clock <= 24 )\n" "rotate <0, 0, 0.5*WCA*(clock/25)*(clock/25)>\n" "#end\n" /* Cruise */ "#if ( (clock >= 25) & (clock <= 224) )\n" "rotate <0, 0, (WCA/2)+WCA*((clock-25)/25)>\n" "#end\n" /* Overlap */ /* Deceleration */ "#if ( (clock >= 225) & (clock <= 274) )\n" "rotate <0, 0, 360-WCA + WCA*((clock-225)/25) " " - 0.5*(WCA/2)*((clock-225)/25)*((clock-225)/25) >\n" "#end\n" /* Acceleration */ "#if ( (clock >= 225) & (clock <= 274) )\n" "rotate <0.5*(WCL/2)*((clock-225)/25)*((clock-225)/25), 0, 0>\n" "#end\n" /* Second half */ /* Cruise */ "#if ( (clock >= 275) & (clock <= 396) )\n" "rotate \n" "#end\n" /* Deceleration to pause */ "#if ( (clock >= 397) & (clock <= 421) )\n" "rotate <(1+TA)*WCL+ WCL*((clock-397)/25) " " - 0.5*WCL*((clock-397)/25)*((clock-397)/25), 0, 0 >\n" "#end\n" /* Acceleration after pause */ "#if ( (clock >= 422) & (clock <= 446) )\n" "rotate <(1.5+TA)*WCL" " + 0.5*WCL*((clock-422)/25)*((clock-422)/25), 0, 0>\n" "#end\n" /* Final Cruise */ "#if ( (clock >= 447) & (clock <= 474) )\n" "rotate <(2+TA)*WCL + WCL*((clock-447)/25), 0, 0>\n" "#end\n" /* Final Deceleration */ "#if ( (clock >= 475) & (clock <= 499) )\n" "rotate <(2+TA+TB)*WCL + WCL*((clock-475)/25) " " - 0.5*WCL*((clock-475)/25)*((clock-475)/25), 0, 0 >\n" "#end\n"); fprintf(fh, "}\n"); max = 0.5e6; for ( h=-INDMAX; h max) ) { s = 6; } switch ( s ) { case 0 : /* Black to blue */ r = 0.0; g = 0.0; b = p; break; case 1 : /* Blue to green */ r = 0.0; g = p; b = 1.0-p; break; case 2 : /* Green to red */ r =p; g = 1.0-p; b = 0.0; break; case 3 : /* Red to Orange */ r = 1.0; g = 0.5*p; b = 0.0; break; case 4 : /* Orange to Yellow */ r = 1.0; g = 0.5 + 0.5*p; b = 0.0; break; case 5 : /* Yellow to White */ r = 1.0; g = 1.0; b = 1.0*p; break; case 6 : /* Pixel has hit the maximum value */ r = 1.0; g = 1.0; b = 1.0; break; } val = max-val; if ( val <= 0.0 ) continue; radius = 0.1 * sqrt(sqrt(val))/1e2; radius -= 0.005; if ( radius > 0.03 ) radius = 0.03; if ( radius <= 0.0 ) continue; trans = (0.03-radius)/0.03; radius += 0.002; x = asx*h + bsx*k + csx*l; y = asy*h + bsy*k + csy*l; z = asz*h + bsz*k + csz*l; fprintf(fh, "sphere { <%.5f, %.5f, %.5f>, %.5f " "texture{pigment{color rgb <%f, %f, %f>" " transmit %f} " "finish { reflection 0.1 } } \n" "transform { TRANS }\n" "}\n", x/1e9, y/1e9, z/1e9, radius, r, g, b, trans); } } } fprintf(fh, "\n"); fclose(fh); for ( i=0; i MAX_PROC) || (nproc < 1) ) { ERROR("Number of processes is invalid.\n"); return 1; } infile = argv[optind]; cell = load_cell_from_pdb(pdb); if ( cell == NULL ) { ERROR("Couldn't load unit cell from %s\n", pdb); return 1; } cts = new_list_count(); ref = read_reflections(infile, cts, NULL); if ( ref == NULL ) { ERROR("Couldn't open file '%s'\n", infile); return 1; } if ( config_povray ) { povray_render_animation(cell, ref, cts, nproc); } else if ( config_zoneaxis ) { render_za(cell, ref, cts); } else { ERROR("Try again with either --povray or --zone-axis.\n"); } free(pdb); return 0; }