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<?xml version="1.0"?>
<!DOCTYPE book PUBLIC "-//OASIS//DTD DocBook XML V4.3//EN"
"http://www.oasis-open.org/docbook/xml/4.3/docbookx.dtd"
[
<!ENTITY % local.common.attrib "xmlns:xi CDATA #FIXED 'http://www.w3.org/2003/XInclude'">
]>
<book id="index">
<bookinfo>
<title>CrystFEL Reference Manual</title>
<releaseinfo>
For libcrystfel from CrystFEL 0.5.2.
</releaseinfo>
<abstract>
This is the internal documentation for CrystFEL. Unless you are looking at
the code, writing new programs or fixing bugs, you should not need to read
this. You might use the information here when reading the code or to better
understand how the software works, or refer to it when creating a new
program within the suite.
</abstract>
</bookinfo>
<chapter>
<title>Images</title>
<xi:include href="xml/image.xml"/>
</chapter>
<chapter>
<title>Handling reflection data</title>
<abstract>There are three main reflection list thingies.</abstract>
<xi:include href="xml/reflist.xml"/>
<xi:include href="xml/reflist-utils.xml"/>
</chapter>
<chapter>
<title>Unit cells</title>
<xi:include href="xml/unitcell.xml"/>
<xi:include href="xml/cell-utils.xml"/>
</chapter>
<chapter>
<title>Crystals</title>
<xi:include href="xml/crystal.xml"/>
</chapter>
<chapter>
<title>Geometry of diffraction</title>
<xi:include href="xml/geometry.xml"/>
</chapter>
<chapter>
<title>Beam parameters</title>
<xi:include href="xml/beam-params.xml"/>
</chapter>
<chapter>
<title>Peaks</title>
<xi:include href="xml/peaks.xml"/>
</chapter>
<chapter>
<title>Image filters</title>
<xi:include href="xml/filter.xml"/>
</chapter>
<chapter>
<title>Statistics and R-factors</title>
<xi:include href="xml/statistics.xml"><xi:fallback /></xi:include>
</chapter>
<chapter>
<title>Symmetry</title>
<xi:include href="xml/symmetry.xml"><xi:fallback /></xi:include>
</chapter>
<chapter>
<title>Integer Matrices</title>
<xi:include href="xml/integer_matrix.xml"><xi:fallback /></xi:include>
</chapter>
<chapter>
<title>Indexing</title>
<xi:include href="xml/indexing.xml"><xi:fallback /></xi:include>
</chapter>
<chapter>
<title>Integration</title>
<xi:include href="xml/integration.xml"><xi:fallback /></xi:include>
</chapter>
<chapter>
<title>Detector</title>
<xi:include href="xml/detector.xml"><xi:fallback /></xi:include>
</chapter>
<chapter>
<title>HDF5</title>
<xi:include href="xml/hdf5-file.xml"><xi:fallback /></xi:include>
</chapter>
<chapter>
<title>Stream</title>
<xi:include href="xml/stream.xml"><xi:fallback /></xi:include>
</chapter>
<chapter>
<title>Render</title>
<xi:include href="xml/render.xml"><xi:fallback /></xi:include>
</chapter>
<chapter>
<title>Parallel programming</title>
<xi:include href="xml/thread-pool.xml"><xi:fallback /></xi:include>
</chapter>
<chapter>
<title>Miscellaneous</title>
<xi:include href="xml/quaternion.xml"/>
<xi:include href="xml/histogram.xml"/>
<xi:include href="xml/utils.xml"/>
</chapter>
<chapter>
<title>Information for developers</title>
<xi:include href="xml/coding-standards.xml"><xi:fallback /></xi:include>
</chapter>
<index id="api-index-full">
<title>API Index</title>
<xi:include href="xml/api-index-full.xml"><xi:fallback /></xi:include>
</index>
</book>
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