1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
|
/*
* datatemplate_priv.h
*
* Data template structure (private parts)
*
* Copyright © 2019-2020 Deutsches Elektronen-Synchrotron DESY,
* a research centre of the Helmholtz Association.
*
* Authors:
* 2019-2020 Thomas White <taw@physics.org>
*
* This file is part of CrystFEL.
*
* CrystFEL is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* CrystFEL is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CrystFEL. If not, see <http://www.gnu.org/licenses/>.
*
*/
/* NB This file is NOT part of the public API, and should NOT
* be installed, but rather stays in the libcrystfel source folder. */
#ifndef DATATEMPLATE_PRIV_H
#define DATATEMPLATE_PRIV_H
/* Maximum number of dimensions expected in data files */
#define MAX_DIMS (16)
/* Maximum number of placeholders expected in path structure */
#define MAX_PATH_PARTS (16)
enum adu_per_unit
{
ADU_PER_PHOTON,
ADU_PER_EV
};
enum wavelength_unit
{
WAVELENGTH_M,
WAVELENGTH_A,
WAVELENGTH_ELECTRON_KV,
WAVELENGTH_ELECTRON_V,
WAVELENGTH_PHOTON_KEV,
WAVELENGTH_PHOTON_EV
};
struct dt_rigid_group
{
char *name;
struct panel_template **panels;
int n_panels;
};
struct dt_rg_collection
{
char *name;
struct dt_rigid_group **rigid_groups;
int n_rigid_groups;
};
/* Special values for dimension IDs */
#define DIM_FS (-1)
#define DIM_SS (-2)
#define DIM_UNDEFINED (-3)
#define DIM_PLACEHOLDER (-4)
/**
* Represents one panel of a detector
*/
struct panel_template
{
/** Text name for panel */
char *name;
/** \name Location of corner in units of the pixel size of this panel */
/**@{*/
double cnx;
double cny;
/**@}*/
/** Location to get \ref cnz from, e.g. from HDF5 file */
char *cnz_from;
/** The offset to be applied from \ref clen */
double cnz_offset;
/** Location of mask data */
char *mask;
/** Filename for mask data */
char *mask_file;
/** Location of per-pixel saturation map */
char *satmap;
/** Filename for saturation map */
char *satmap_file;
/** Mark entire panel as bad if set */
int bad;
/** Resolution in pixels per metre */
double pixel_pitch;
/** Number of detector intensity units per photon, or eV */
double adu_scale;
enum adu_per_unit adu_scale_unit;
/** Treat pixel as unreliable if higher than this */
double max_adu;
/** Location of data in file (possibly with placeholders) */
char *data;
/** Dimensions (see definitions for DIM_FS etc above) */
signed int dims[MAX_DIMS];
/** \name Transformation matrix from pixel coordinates to lab frame */
/*@{*/
double fsx;
double fsy;
double fsz;
double ssx;
double ssy;
double ssz;
/*@}*/
/** \name Rail direction */
/*@{*/
double rail_x;
double rail_y;
double rail_z;
/*@}*/
/* Value of clen (without coffset) at which beam is centered */
double clen_for_centering;
/** \name Position of the panel in the data block in the file. */
/*@{*/
int orig_min_fs;
int orig_max_fs;
int orig_min_ss;
int orig_max_ss;
/*@}*/
};
struct dt_badregion
{
char name[1024];
int is_fsss;
char *panel;
double min_x;
double max_x;
double min_y;
double max_y;
/* Specified INCLUSIVELY */
int min_fs;
int max_fs;
int min_ss;
int max_ss;
};
struct _datatemplate
{
struct panel_template *panels;
int n_panels;
struct dt_badregion *bad;
int n_bad;
char *wavelength_from;
double photon_energy_bandwidth; /* Eww */
enum wavelength_unit wavelength_unit;
unsigned int mask_bad;
unsigned int mask_good;
struct dt_rigid_group **rigid_groups;
int n_rigid_groups;
struct dt_rg_collection **rigid_group_collections;
int n_rg_collections;
char *peak_list;
};
#endif /* DATATEMPLATE_PRIV_H */
|
