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/*
* peaks.h
*
* Peak search and other image analysis
*
* Copyright © 2012 Deutsches Elektronen-Synchrotron DESY,
* a research centre of the Helmholtz Association.
*
* Authors:
* 2010-2012 Thomas White <taw@physics.org>
*
* This file is part of CrystFEL.
*
* CrystFEL is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* CrystFEL is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CrystFEL. If not, see <http://www.gnu.org/licenses/>.
*
*/
#ifndef PEAKS_H
#define PEAKS_H
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include <pthread.h>
#include "reflist.h"
extern void search_peaks(struct image *image, float threshold,
float min_gradient, float min_snr,
double ir_inn, double ir_mid, double ir_out);
extern void integrate_reflections(struct image *image,
int use_closer, int bgsub, double min_snr,
double ir_inn, double ir_mid, double ir_out,
int integrate_saturated);
extern double peak_lattice_agreement(struct image *image, UnitCell *cell,
double *pst);
extern int peak_sanity_check(struct image *image);
extern void estimate_resolution(RefList *list, UnitCell *cell,
double *min, double *max);
extern void validate_peaks(struct image *image, double min_snr,
int ir_inn, int ir_mid, int ir_out);
#endif /* PEAKS_H */
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