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/*
* peaks.h
*
* Peak search and other image analysis
*
* Copyright © 2012-2013 Deutsches Elektronen-Synchrotron DESY,
* a research centre of the Helmholtz Association.
*
* Authors:
* 2010-2013 Thomas White <taw@physics.org>
*
* This file is part of CrystFEL.
*
* CrystFEL is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* CrystFEL is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CrystFEL. If not, see <http://www.gnu.org/licenses/>.
*
*/
#ifndef PEAKS_H
#define PEAKS_H
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include <pthread.h>
#include "reflist.h"
extern int *make_BgMask(struct image *image, struct panel *p, double ir_inn);
extern void search_peaks(struct image *image, float threshold,
float min_gradient, float min_snr,
double ir_inn, double ir_mid, double ir_out,
int use_saturated);
extern int peak_sanity_check(struct image *image, Crystal **crystals,
int n_cryst);
extern void validate_peaks(struct image *image, double min_snr,
int ir_inn, int ir_mid, int ir_out,
int use_saturated);
extern int integrate_peak(struct image *image, int cfs, int css,
double *pfs, double *pss,
double *intensity, double *sigma,
double ir_inn, double ir_mid, double ir_out,
int *bgPkMask, int *saturated);
#endif /* PEAKS_H */
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