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/*
* detector.c
*
* Detector properties
*
* (c) 2006-2010 Thomas White <taw@physics.org>
*
* Part of CrystFEL - crystallography with a FEL
*
*/
#include <stdlib.h>
#include <math.h>
#include <stdio.h>
#include <string.h>
#include "image.h"
#include "utils.h"
#include "diffraction.h"
#include "detector.h"
/* Number of photons in pulse */
#define FLUENCE (1.0e13)
/* Detector's quantum efficiency (ADU per photon, front detector) */
#define DQE (167.0)
/* Radius of the water column */
#define WATER_RADIUS (3.0e-6 / 2.0)
/* Radius of X-ray beam */
#define BEAM_RADIUS (3.0e-6 / 2.0)
void record_image(struct image *image, int do_water, int do_poisson)
{
int x, y;
double total_energy, energy_density;
double ph_per_e;
double area;
/* How many photons are scattered per electron? */
area = M_PI*pow(BEAM_RADIUS, 2.0);
total_energy = FLUENCE * ph_lambda_to_en(image->lambda);
energy_density = total_energy / area;
ph_per_e = (FLUENCE/area) * pow(THOMSON_LENGTH, 2.0);
STATUS("Fluence = %8.2e photons, "
"Energy density = %5.3f kJ/cm^2, "
"Total energy = %5.3f microJ\n",
FLUENCE, energy_density/1e7, total_energy*1e6);
image->hdr = malloc(image->width * image->height * sizeof(double));
for ( x=0; x<image->width; x++ ) {
for ( y=0; y<image->height; y++ ) {
int counts;
double cf;
double intensity, sa, water;
double complex val;
double pix_area, Lsq;
double dsq, proj_area;
struct panel *p;
val = image->sfacs[x + image->width*y];
intensity = pow(cabs(val), 2.0);
p = find_panel(&image->det, x, y);
/* FIXME: Move to diffraction.c somehow */
if ( do_water ) {
struct rvec q;
q = get_q(image, x, y, 1, NULL, 1.0/image->lambda);
/* Add intensity contribution from water */
water = water_intensity(q,
ph_lambda_to_en(image->lambda),
BEAM_RADIUS, WATER_RADIUS);
intensity += water;
}
/* Area of one pixel */
pix_area = pow(1.0/p->res, 2.0);
Lsq = pow(p->clen, 2.0);
/* Area of pixel as seen from crystal (approximate) */
proj_area = pix_area * cos(image->twotheta[x + image->width*y]);
/* Calculate distance from crystal to pixel */
dsq = pow(((double)x - p->cx) / p->res, 2.0);
dsq += pow(((double)y - p->cy) / p->res, 2.0);
/* Projected area of pixel divided by distance squared */
sa = proj_area / (dsq + Lsq);
if ( do_poisson ) {
counts = poisson_noise(intensity * ph_per_e * sa * DQE);
} else {
double rounded;
cf = intensity * ph_per_e * sa * DQE;
rounded = rint(cf);
counts = (int)rounded;
}
image->hdr[x + image->width*y] = counts;
}
progress_bar(x, image->width-1, "Post-processing");
}
image->data = malloc(image->width * image->height * sizeof(float));
for ( x=0; x<image->width; x++ ) {
for ( y=0; y<image->height; y++ ) {
int val;
val = image->hdr[x + image->width*y];
image->data[x + image->width*y] = val;
}
}
}
struct panel *find_panel(struct detector *det, int x, int y)
{
int p;
for ( p=0; p<det->n_panels; p++ ) {
if ( (x >= det->panels[p].min_x)
&& (x <= det->panels[p].max_x)
&& (y >= det->panels[p].min_y)
&& (y <= det->panels[p].max_y) ) {
return &det->panels[p];
}
}
ERROR("No mapping found for %i,%i\n", x, y);
return NULL;
}
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