1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
|
/*
* image.h
*
* Handle images and image features
*
* (c) 2006-2010 Thomas White <taw@physics.org>
*
* Part of CrystFEL - crystallography with a FEL
*
*/
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#ifndef IMAGE_H
#define IMAGE_H
#include <stdint.h>
#include <complex.h>
#include <sys/types.h>
#include "utils.h"
#include "cell.h"
#include "detector.h"
#define MAX_CELL_CANDIDATES (32)
/* Structure describing a feature in an image */
struct imagefeature {
struct image *parent;
double x;
double y;
double intensity;
/* Reciprocal space coordinates (m^-1 of course) of this feature */
double rx;
double ry;
double rz;
/* Internal use only */
int valid;
const char *name;
};
/* An opaque type representing a list of image features */
typedef struct _imagefeaturelist ImageFeatureList;
/* This structure represents a predicted peak in an image */
struct cpeak
{
/* Indices */
signed int h;
signed int k;
signed int l;
double min_distance;
int valid;
/* Partiality */
double r1; /* First excitation error */
double r2; /* Second excitation error */
double p; /* Partiality */
int clamp1; /* Clamp status for r1 */
int clamp2; /* Clamp status for r2 */
/* Location in image */
int x;
int y;
int scalable;
/* Intensity */
double intensity;
};
/* Structure describing an image */
struct image {
float *data;
uint16_t *flags;
double *twotheta;
UnitCell *indexed_cell;
UnitCell *candidate_cells[MAX_CELL_CANDIDATES];
int ncells;
struct detector *det;
struct beam_params *beam; /* The nominal beam parameters */
char *filename;
struct cpeak *cpeaks;
int n_cpeaks;
int id; /* ID number of the thread
* handling this image */
/* Information about the crystal */
double m; /* Mosaicity in radians */
/* Per-shot radiation values */
double lambda; /* Wavelength in m */
double div; /* Divergence in radians */
double bw; /* Bandwidth as a fraction */
double f0; /* Incident intensity */
int f0_available; /* 0 if f0 wasn't available
* from the input. */
double osf; /* Overall scaling factor */
double profile_radius; /* Radius of reflection */
int width;
int height;
ImageFeatureList *features;
};
/* An opaque type representing a list of images */
typedef struct _imagelist ImageList;
/* Image lists */
extern ImageList *image_list_new(void);
extern int image_add(ImageList *list, struct image *image);
/* Feature lists */
extern ImageFeatureList *image_feature_list_new(void);
extern void image_feature_list_free(ImageFeatureList *flist);
extern void image_add_feature(ImageFeatureList *flist, double x, double y,
struct image *parent, double intensity,
const char *name);
extern void image_remove_feature(ImageFeatureList *flist, int idx);
extern struct imagefeature *image_feature_closest(ImageFeatureList *flist,
double x, double y, double *d,
int *idx);
extern int image_feature_count(ImageFeatureList *flist);
extern struct imagefeature *image_get_feature(ImageFeatureList *flist, int idx);
#endif /* IMAGE_H */
|
