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/*
* process_image.h
*
* The processing pipeline for one image
*
* Copyright © 2012-2013 Deutsches Elektronen-Synchrotron DESY,
* a research centre of the Helmholtz Association.
*
* Authors:
* 2010-2013 Thomas White <taw@physics.org>
*
* This file is part of CrystFEL.
*
* CrystFEL is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* CrystFEL is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CrystFEL. If not, see <http://www.gnu.org/licenses/>.
*
*/
#ifndef PROCESS_IMAGE_H
#define PROCESS_IMAGE_H
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
enum {
PEAK_ZAEF,
PEAK_HDF5,
};
/* Information about the indexing process which is common to all patterns */
struct index_args
{
UnitCell *cell;
int cmfilter;
int noisefilter;
int median_filter;
int satcorr;
int closer;
int bgsub;
float threshold;
float min_gradient;
float min_snr;
double min_int_snr;
struct detector *det;
IndexingMethod *indm;
IndexingPrivate **ipriv;
int peaks; /* Peak detection method */
float tols[4];
struct beam_params *beam;
char *element;
char *hdf5_peak_path;
float ir_inn;
float ir_mid;
float ir_out;
struct copy_hdf5_field *copyme;
int integrate_saturated;
int use_saturated;
int no_revalidate;
int integrate_found;
int stream_peaks;
int stream_refls;
int res_cutoff;
};
/* Information about the indexing process for one pattern */
struct pattern_args
{
/* "Input" */
char *filename;
/* "Output" */
int n_crystals;
};
extern void process_image(const struct index_args *iargs,
struct pattern_args *pargs, Stream *st,
int cookie);
#endif /* PROCESS_IMAGEs_H */
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