path: root/src/render.c

/*
 * render.c
 *
 * Render a high dynamic range buffer in some sensible way
 *
 * (c) 2006-2010 Thomas White <taw@physics.org>
 *
 * Part of CrystFEL - crystallography with a FEL
 *
 */

#ifdef HAVE_CONFIG_H
#include <config.h>
#endif

#include <stdlib.h>
#include <gdk-pixbuf/gdk-pixbuf.h>
#include <math.h>
#include <stdint.h>
#include <png.h>
#include <tiffio.h>

#include "hdf5-file.h"
#include "render.h"
#include "peaks.h"
#include "filters.h"


static void *render_bin(float *in, int inw, int inh, int binning, float *maxp)
{
	float *data;
	int x, y;
	int w, h;
	float max;

	w = inw / binning;
	h = inh / binning;      /* Some pixels might get discarded */

	data = malloc(w*h*sizeof(float));
	max = 0.0;

	for ( x=0; x<w; x++ ) {
	for ( y=0; y<h; y++ ) {

		double total;
		size_t xb, yb;

		total = 0;
		for ( xb=0; xb<binning; xb++ ) {
		for ( yb=0; yb<binning; yb++ ) {

			total += in[binning*x+xb + (binning*y+yb)*inw];

		}
		}

		data[x+w*y] = total / ((double)binning * (double)binning);
		if ( data[x+w*y] > max ) max = data[x+w*y];

	}
	}

	*maxp = max;
	return data;
}


float *render_get_image_binned(DisplayWindow *dw, int binning, float *max)
{
	struct image *image;
	float *data;

	if ( (dw->image == NULL) || (dw->image_dirty) ) {

		image = malloc(sizeof(struct image));
		if ( image == NULL ) return NULL;
		image->features = NULL;
		image->data = NULL;

		hdf5_read(dw->hdfile, image, 1);
		dw->image_dirty = 0;
		if ( dw->cmfilter ) filter_cm(image);
		if ( dw->noisefilter ) filter_noise(image, NULL);

		/* Deal with the old image, if existing */
		if ( dw->image != NULL ) {
			image->features = dw->image->features;
			if ( dw->image->data != NULL ) free(dw->image->data);
			free(dw->image);
		}

		dw->image = image;

	}

	data = render_bin(dw->image->data, hdfile_get_width(dw->hdfile),
	                  hdfile_get_height(dw->hdfile), binning, max);

	return data;
}


static inline void render_rgb(float val, float max,
                              guchar *rp, guchar *gp, guchar *bp)
{
	int s;
	float p;
	guchar r, g, b;

	s = val / (max/6);
	p = fmod(val, max/6);
	p /= (max/6);

	r = 0;	g = 0;	b = 0;

	if ( (val < 0.0) ) {
		s = 0;
		p = 1.0;
	}
	if ( (val > max) ) {
		s = 6;
	}
	switch ( s ) {
		case 0 : {	/* Black to blue */
			r = 0;     g = 0;            b = p*255;
			break;
		}
		case 1 : {	/* Blue to pink */
			r = 255*p; g = 0;            b = 255;
			break;
		}
		case 2 : {	/* Pink to red */
			r = 255;  g = 0;    b = (1-p)*255;
			break;
		}
		case 3 : {	/* Red to Orange */
			r = 255;   g = 127*p;        b = 0;
			break;
		}
		case 4 : {	/* Orange to Yellow */
			r = 255;   g = 127 + 127*p;  b = 0;
			break;
		}
		case 5 : {	/* Yellow to White */
			r = 255;   g = 255;          b = 255*p;
			break;
		}
		case 6 : {	/* Pixel has hit the maximum value */
			r = 255;   g = 255;          b = 255;
			break;
		}
	}

	*rp = r;
	*gp = g;
	*bp = b;
}


static inline void render_mono(float val, float max,
                               guchar *rp, guchar *gp, guchar *bp)
{
	float p;
	p = (float)val / (float)max;
	if ( val < 0.0 ) p = 0.0;
	if ( val > max ) p = 1.0;
	*rp = 255.0*p;
	*gp = 255.0*p;
	*bp = 255.0*p;
}


static inline void render_invmono(float val, float max,
                                  guchar *rp, guchar *gp, guchar *bp)
{
	float p;
	p = (float)val / (float)max;
	p = 1.0 - p;
	if ( val < 0.0 ) p = 1.0;
	if ( val > max ) p = 0.0;
	*rp = 255.0*p;
	*gp = 255.0*p;
	*bp = 255.0*p;
}


/* NB This function is shared between render_get_image() and
 * render_get_colour_scale() */
static void render_free_data(guchar *data, gpointer p)
{
	free(data);
}


static void show_marked_features(struct image *image, guchar *data,
                                 int w, int h, int binning)
{
	int i;
	float r = 10.0/binning;

	if ( image->features == NULL ) return;

	for ( i=0; i<image_feature_count(image->features); i++ ) {

		struct imagefeature *f;
		float x, y;
		double th;

		f = image_get_feature(image->features, i);
		if ( f == NULL ) continue;

		x = f->x / (float)binning;
		y = f->y / (float)binning;

		for ( th=0; th<2*M_PI; th+=M_PI/40.0 ) {

			int nx, ny;

			nx = x + r*cos(th);
			ny = y + r*sin(th);

			if ( nx < 0 ) continue;
			if ( ny < 0 ) continue;
			if ( nx >= w ) continue;
			if ( ny >= h ) continue;

			data[3*( nx+w*(h-1-ny) )+0] = 0;
			data[3*( nx+w*(h-1-ny) )+1] = 0;
			data[3*( nx+w*(h-1-ny) )+2] = 255;

		}
	}
}


/* Return a pixbuf containing a rendered version of the image after binning.
 * This pixbuf might be scaled later - hopefully mostly in a downward
 * direction. */
GdkPixbuf *render_get_image(DisplayWindow *dw)
{
	int mw, mh, w, h;
	guchar *data;
	float *hdr;
	size_t x, y;
	float max;

	mw = hdfile_get_width(dw->hdfile);
	mh = hdfile_get_height(dw->hdfile);
	w = mw / dw->binning;
	h = mh / dw->binning;

	/* High dynamic range version */
	hdr = render_get_image_binned(dw, dw->binning, &max);
	if ( hdr == NULL ) return NULL;

	/* Rendered (colourful) version */
	data = malloc(3*w*h);
	if ( data == NULL ) {
		free(hdr);
		return NULL;
	}

	max /= dw->boostint;
	if ( max <= 6 ) { max = 10; }
	/* These x,y coordinates are measured relative to the bottom-left
	 * corner */
	for ( y=0; y<h; y++ ) {
	for ( x=0; x<w; x++ ) {

		float val;
		guchar r = 0;
		guchar g = 0;
		guchar b = 0;

		val = hdr[x+w*y];
		switch ( dw->scale ) {
		case SCALE_COLOUR : {
			render_rgb(val, max, &r, &g, &b);
			break;
		}
		case SCALE_MONO : {
			render_mono(val, max, &r, &g, &b);
			break;
		}
		case SCALE_INVMONO : {
			render_invmono(val, max, &r, &g, &b);
			break;
		}
		}

		/* Stuff inside square brackets makes this pixel go to
		 * the expected location in the pixbuf (which measures
		 * from the top-left corner */
		data[3*( x+w*(h-1-y) )+0] = r;
		data[3*( x+w*(h-1-y) )+1] = g;
		data[3*( x+w*(h-1-y) )+2] = b;

	}
	}

	show_marked_features(dw->image, data, w, h, dw->binning);

	/* Finished with this */
	free(hdr);

	/* Create the pixbuf from the 8-bit display data */
	return gdk_pixbuf_new_from_data(data, GDK_COLORSPACE_RGB, FALSE, 8,
					w, h, w*3, render_free_data, NULL);
}

GdkPixbuf *render_get_colour_scale(size_t w, size_t h, int scale)
{
	guchar *data;
	size_t x, y;
	int max;

	data = malloc(3*w*h);
	if ( data == NULL ) return NULL;

	max = h;

	for ( y=0; y<h; y++ ) {

		guchar r = 0;
		guchar g = 0;
		guchar b = 0;
		int val;

		val = y;

		switch ( scale ) {
		case SCALE_COLOUR : {
			render_rgb(val, max, &r, &g, &b);
			break;
		}
		case SCALE_MONO : {
			render_mono(val, max, &r, &g, &b);
			break;
		}
		case SCALE_INVMONO : {
			render_invmono(val, max, &r, &g, &b);
			break;
		}
		}

		data[3*( 0+w*(h-1-y) )+0] = 0;
		data[3*( 0+w*(h-1-y) )+1] = 0;
		data[3*( 0+w*(h-1-y) )+2] = 0;
		for ( x=1; x<w; x++ ) {
			data[3*( x+w*(h-1-y) )+0] = r;
			data[3*( x+w*(h-1-y) )+1] = g;
			data[3*( x+w*(h-1-y) )+2] = b;
		}

	}

	return gdk_pixbuf_new_from_data(data, GDK_COLORSPACE_RGB, FALSE, 8,
					w, h, w*3, render_free_data, NULL);
}


int render_png(DisplayWindow *dw, const char *filename)
{
	FILE *fh;
	png_structp png_ptr;
	png_infop info_ptr;
	png_bytep *row_pointers;
	int x, y;
	float *hdr;
	float max;
	int w, h;

	w = dw->width;
	h = dw->height;

	hdr = render_get_image_binned(dw, dw->binning, &max);
	if ( hdr == NULL ) return 1;

	fh = fopen(filename, "wb");
	if ( !fh ) {
		ERROR("Couldn't open output file.\n");
		return 1;
	}
	png_ptr = png_create_write_struct(PNG_LIBPNG_VER_STRING,
	                                  NULL, NULL, NULL);
	if ( !png_ptr ) {
		ERROR("Couldn't create PNG write structure.\n");
		fclose(fh);
		return 1;
	}
	info_ptr = png_create_info_struct(png_ptr);
	if ( !info_ptr ) {
		png_destroy_write_struct(&png_ptr, (png_infopp)NULL);
		ERROR("Couldn't create PNG info structure.\n");
		fclose(fh);
		return 1;
	}
	if ( setjmp(png_jmpbuf(png_ptr)) ) {
		png_destroy_write_struct(&png_ptr, &info_ptr);
		fclose(fh);
		ERROR( "PNG write failed.\n");
		return 1;
	}
	png_init_io(png_ptr, fh);

	png_set_IHDR(png_ptr, info_ptr, w, h, 8,
	             PNG_COLOR_TYPE_RGB, PNG_INTERLACE_NONE,
	             PNG_COMPRESSION_TYPE_DEFAULT, PNG_FILTER_TYPE_DEFAULT);

	row_pointers = malloc(h*sizeof(png_bytep *));

	/* Write the image data */
	max /= dw->boostint;
	if ( max <= 6 ) { max = 10; }

	for ( y=0; y<h; y++ ) {

		row_pointers[y] = malloc(w*3);

		for ( x=0; x<w; x++ ) {

			guchar r = 0;
			guchar g = 0;
			guchar b = 0;
			float val;

			val = hdr[x+w*y];

			switch ( dw->scale ) {
			case SCALE_COLOUR : {
				render_rgb(val, max, &r, &g, &b);
				break;
			}
			case SCALE_MONO : {
				render_mono(val, max, &r, &g, &b);
				break;
			}
			case SCALE_INVMONO : {
				render_invmono(val, max, &r, &g, &b);
				break;
			}
			}
			row_pointers[y][3*x] = (png_byte)r;
			row_pointers[y][3*x+1] = (png_byte)g;
			row_pointers[y][3*x+2] = (png_byte)b;

		}
	}

	for ( y=0; y<h/2+1; y++ ) {
		png_bytep scratch;
		scratch = row_pointers[y];
		row_pointers[y] = row_pointers[h-y-1];
		row_pointers[h-y-1] = scratch;
	}

	png_set_rows(png_ptr, info_ptr, row_pointers);
	png_write_png(png_ptr, info_ptr, PNG_TRANSFORM_IDENTITY, NULL);

	png_destroy_write_struct(&png_ptr, &info_ptr);
	for ( y=0; y<h; y++ ) {
		free(row_pointers[y]);
	}
	free(row_pointers);
	fclose(fh);

	free(hdr);

	return 0;
}


int render_tiff_fp(DisplayWindow *dw, const char *filename)
{
	TIFF *th;
	struct image *image;
	float *line;
	int y;

	/* Get raw, unbinned image data */
	image = malloc(sizeof(struct image));
	if ( image == NULL ) return 1;
	image->features = NULL;
	image->data = NULL;
	hdf5_read(dw->hdfile, image, 1);
	if ( dw->cmfilter ) filter_cm(image);
	if ( dw->noisefilter ) filter_noise(image, NULL);

	th = TIFFOpen(filename, "w");
	if ( th == NULL ) return 1;

	TIFFSetField(th, TIFFTAG_IMAGEWIDTH, image->width);
	TIFFSetField(th, TIFFTAG_IMAGELENGTH, image->height);
	TIFFSetField(th, TIFFTAG_SAMPLESPERPIXEL, 1);
	TIFFSetField(th, TIFFTAG_SAMPLEFORMAT, SAMPLEFORMAT_IEEEFP);
	TIFFSetField(th, TIFFTAG_BITSPERSAMPLE, 32);
	TIFFSetField(th, TIFFTAG_PHOTOMETRIC, PHOTOMETRIC_MINISBLACK);
	TIFFSetField(th, TIFFTAG_ORIENTATION, ORIENTATION_TOPLEFT);
	TIFFSetField(th, TIFFTAG_PLANARCONFIG, PLANARCONFIG_CONTIG);
	TIFFSetField(th, TIFFTAG_ROWSPERSTRIP,
	             TIFFDefaultStripSize(th, image->width*4));

	line = _TIFFmalloc(TIFFScanlineSize(th));
	for ( y=0; y<image->height; y++ ) {
		memcpy(line, &image->data[(image->height-1-y)*image->width],
		       image->width*4);
		TIFFWriteScanline(th, line, y, 0);
	}
	_TIFFfree(line);

	TIFFClose(th);

	return 0;
}


int render_tiff_int16(DisplayWindow *dw, const char *filename)
{
	TIFF *th;
	struct image *image;
	int16_t *line;
	int x, y;
	float max;

	/* Get raw, unbinned image data */
	image = malloc(sizeof(struct image));
	if ( image == NULL ) return 1;
	image->features = NULL;
	image->data = NULL;
	hdf5_read(dw->hdfile, image, 1);
	if ( dw->cmfilter ) filter_cm(image);
	if ( dw->noisefilter ) filter_noise(image, NULL);

	th = TIFFOpen(filename, "w");
	if ( th == NULL ) return 1;

	TIFFSetField(th, TIFFTAG_IMAGEWIDTH, image->width);
	TIFFSetField(th, TIFFTAG_IMAGELENGTH, image->height);
	TIFFSetField(th, TIFFTAG_SAMPLESPERPIXEL, 1);
	TIFFSetField(th, TIFFTAG_SAMPLEFORMAT, SAMPLEFORMAT_INT); /* (signed) */
	TIFFSetField(th, TIFFTAG_BITSPERSAMPLE, 16);
	TIFFSetField(th, TIFFTAG_PHOTOMETRIC, PHOTOMETRIC_MINISBLACK);
	TIFFSetField(th, TIFFTAG_ORIENTATION, ORIENTATION_TOPLEFT);
	TIFFSetField(th, TIFFTAG_PLANARCONFIG, PLANARCONFIG_CONTIG);
	TIFFSetField(th, TIFFTAG_ROWSPERSTRIP,
	             TIFFDefaultStripSize(th, image->width*4));

	line = _TIFFmalloc(TIFFScanlineSize(th));
	max = 0.0;
	for ( y=0; y<image->height; y++ ) {
	for ( x=0;x<image->width; x++ ) {
		float val;
		val = image->data[x+image->height*y];
		if ( val > max ) max = val;
	}
	}
	max /= 32767.0;

	for ( y=0; y<image->height; y++ ) {
		for ( x=0;x<image->width; x++ ) {

			float val;

			val = image->data[x+(image->height-1-y)*image->width];
			val *= ((float)dw->boostint/max);

			/* Clamp to 16-bit range,
			 * and work round inability of most readers to deal
			 * with signed integers. */
			val += 1000.0;
			if ( val > 32767.0 ) val = 32767.0;
			if ( val < 0.0 ) val = 0.0;

			line[x] = val;
		}

		TIFFWriteScanline(th, line, y, 0);
	}
	_TIFFfree(line);

	TIFFClose(th);

	return 0;
}