/* * refinetest3d.c * * Unit test for refinement procedure in 3D * * (c) 2007-2008 Thomas White * * dtr - Diffraction Tomography Reconstruction * */ #ifdef HAVE_CONFIG_H #include #endif #include #include #include "basis.h" #include "reflections.h" #include "image.h" #include "reproject.h" #include "refine.h" #include "utils.h" #include "mapping.h" #include "control.h" #include "displaywindow.h" #include "mrc.h" static int check_cell(Basis *cell, Basis *cell_real) { int fail; printf(" Refinement Actual\n"); printf("---------------------------\n"); printf("ax %+8f %+8f\n", cell->a.x/1e9, cell_real->a.x/1e9); printf("ay %+8f %+8f\n", cell->a.y/1e9, cell_real->a.y/1e9); printf("az %+8f %+8f\n", cell->a.z/1e9, cell_real->a.z/1e9); printf("bx %+8f %+8f\n", cell->b.x/1e9, cell_real->b.x/1e9); printf("by %+8f %+8f\n", cell->b.y/1e9, cell_real->b.y/1e9); printf("bz %+8f %+8f\n", cell->b.z/1e9, cell_real->b.z/1e9); printf("cx %+8f %+8f\n", cell->c.x/1e9, cell_real->c.x/1e9); printf("cy %+8f %+8f\n", cell->c.y/1e9, cell_real->c.y/1e9); printf("cz %+8f %+8f\n", cell->c.z/1e9, cell_real->c.z/1e9); fail = 0; if ( fabs(cell->a.x - cell_real->a.x) > 0.01e9 ) { fprintf(stderr, "refinetest3d: ax not determined correctly (got %8f, should be %8f)\n", cell->a.x/1e9, cell_real->a.x/1e9); fail = 1; } else { printf("ax is OK.\n"); } if ( fabs(cell->a.y - cell_real->a.y) > 0.01e9 ) { fprintf(stderr, "refinetest3d: ay not determined correctly (got %8f, should be %8f)\n", cell->a.y/1e9, cell_real->a.y/1e9); fail = 1; } else { printf("ay is OK.\n"); } if ( fabs(cell->a.z - cell_real->a.z) > 0.01e9 ) { fprintf(stderr, "refinetest3d: az not determined correctly (got %8f, should be %8f)\n", cell->a.z/1e9, cell_real->a.z/1e9); fail = 1; } else { printf("az is OK.\n"); } if ( fabs(cell->b.x - cell_real->b.x) > 0.01e9 ) { fprintf(stderr, "refinetest3d: bx not determined correctly (got %8f, should be %8f)\n", cell->b.x/1e9, cell_real->b.x/1e9); fail = 1; } else { printf("bx is OK.\n"); } if ( fabs(cell->b.y - cell_real->b.y) > 0.01e9 ) { fprintf(stderr, "refinetest3d: by not determined correctly (got %8f, should be %8f)\n", cell->b.y/1e9, cell_real->b.y/1e9); fail = 1; } else { printf("by is OK.\n"); } if ( fabs(cell->c.x - cell_real->c.x) > 0.01e9 ) { fprintf(stderr, "refinetest3d: cx not determined correctly (got %8f, should be %8f)\n", cell->c.x/1e9, cell_real->c.x/1e9); fail = 1; } else { printf("cx is OK.\n"); } if ( fabs(cell->c.z - cell_real->c.z) > 0.01e9 ) { fprintf(stderr, "refinetest3d: cz not determined correctly (got %8f, should be %8f)\n", cell->c.z/1e9, cell_real->c.z/1e9); fail = 1; } else { printf("cz is OK.\n"); } printf("bz and cy not checked in this test.\n"); return fail; } int main(int argc, char *argv[]) { ControlContext *ctx; ReflectionList *reflections_real; Basis *cell_real; int fail; ctx = control_ctx_new(); ctx->omega = deg2rad(0.0); ctx->lambda = lambda(300.0e3); /* 300 keV */ ctx->fmode = FORMULATION_PIXELSIZE; ctx->x_centre = 256; ctx->y_centre = 256; ctx->pixel_size = 5e7; image_add(ctx->images, NULL, 512, 512, deg2rad(00.0), ctx); ctx->images->images[0].features = image_feature_list_new(); image_add(ctx->images, NULL, 512, 512, deg2rad(90.0), ctx); ctx->images->images[1].features = image_feature_list_new(); //ctx->omega = deg2rad(90.0); //image_add(ctx->images, NULL, 512, 512, deg2rad(90.0), ctx); //ctx->images->images[2].features = image_feature_list_new(); /* Fudge to avoid horrifying pointer-related death */ ctx->dw = malloc(sizeof(DisplayWindow)); ctx->dw->cur_image = 0; /* The "true" cell */ cell_real = malloc(sizeof(Basis)); cell_real->a.x = 5.0e9; cell_real->a.y = 0.0e9; cell_real->a.z = 0.0e9; cell_real->b.x = 0.0e9; cell_real->b.y = 5.0e9; cell_real->b.z = 0.0e9; cell_real->c.x = 0.0e9; cell_real->c.y = 0.0e9; cell_real->c.z = 5.0e9; /* The "real" reflections */ reflections_real = reflection_list_from_cell(cell_real); ctx->images->images[0].features = reproject_get_reflections(&ctx->images->images[0], reflections_real); ctx->images->images[1].features = reproject_get_reflections(&ctx->images->images[1], reflections_real); //ctx->images->images[2].features = reproject_get_reflections(&ctx->images->images[2], reflections_real); /* The "model" cell to be refined */ ctx->cell = malloc(sizeof(Basis)); ctx->cell->a.x = 5.0e9; ctx->cell->a.y = 0.1e9; ctx->cell->a.z = 0.1e9; ctx->cell->b.x = 0.1e9; ctx->cell->b.y = 5.0e9; ctx->cell->b.z = 0.1e9; ctx->cell->c.x = 0.1e9; ctx->cell->c.y = 0.1e9; ctx->cell->c.z = 5.0e9; ctx->cell_lattice = reflection_list_from_cell(ctx->cell); ctx->images->images[0].rflist = reproject_get_reflections(&ctx->images->images[0], ctx->cell_lattice); reproject_partner_features(ctx->images->images[0].rflist, &ctx->images->images[0]); ctx->images->images[1].rflist = reproject_get_reflections(&ctx->images->images[1], ctx->cell_lattice); reproject_partner_features(ctx->images->images[1].rflist, &ctx->images->images[1]); //ctx->images->images[2].rflist = reproject_get_reflections(&ctx->images->images[2], ctx->cell_lattice); //reproject_partner_features(ctx->images->images[2].rflist, &ctx->images->images[2]); refine_do_cell(ctx); image_feature_list_free(ctx->images->images[0].rflist); image_feature_list_free(ctx->images->images[1].rflist); //image_feature_list_free(ctx->images->images[2].rflist); fail = check_cell(ctx->cell, cell_real); free(ctx); if ( fail ) return 1; printf("\n3D refinement test OK.\n"); return 0; } /* Dummy function stubs */ #include "gtk-valuegraph.h" void displaywindow_update_imagestack(DisplayWindow *dw) { }; void displaywindow_enable_cell_functions(DisplayWindow *dw, gboolean g) { }; void displaywindow_update(DisplayWindow *dw) { }; void displaywindow_error(const char *msg, DisplayWindow *dw) { }; guint gtk_value_graph_get_type() { return 0; }; GtkWidget *gtk_value_graph_new() { return NULL; }; void gtk_value_graph_set_data(GtkValueGraph *vg, double *data, unsigned int n) { };