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author | Thomas White <taw@physics.org> | 2024-06-06 17:11:38 +0200 |
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committer | Thomas White <taw@physics.org> | 2024-06-06 17:11:38 +0200 |
commit | e95b5750c3abaa390dd2655782e2e39bdbd9072a (patch) | |
tree | 8a61b3b258f0cc92f5338f5c6b0b18b4d4f83aaa /doc/articles | |
parent | e26937bd935a1e20e7a5bf6f7a7499052df4f9af (diff) |
Update tutorial.rst
Diffstat (limited to 'doc/articles')
-rw-r--r-- | doc/articles/tutorial.rst | 18 |
1 files changed, 11 insertions, 7 deletions
diff --git a/doc/articles/tutorial.rst b/doc/articles/tutorial.rst index 662332ae..9e02b2f3 100644 --- a/doc/articles/tutorial.rst +++ b/doc/articles/tutorial.rst @@ -762,12 +762,12 @@ Advanced: Check and optimise the detector geometry Even if the geometry file is supposedly correct for the experiment, it's best to check that, for example, the beam position hasn't drifted. CrystFEL -includes a tool for refining the detector geometry, called ``align_detector``. -This tool looks for small alterations to the geometry which improve the average -fit between observed and calculated peak locations, for all patterns, while -taking into account that changing the detector position will also change the -orientation reported by the indexing procedure. The topic of detector geometry -refinement is deep and complex, but only a basic application is needed here. +includes a tool for refining the detector geometry. This tool looks for small +alterations to the geometry which improve the average fit between observed and +calculated peak locations, for all patterns, while taking into account that +changing the detector position will also change the orientation reported by the +indexing procedure. The topic of detector geometry refinement is deep and +complex, but only a basic application is needed here. Click **Refine detector geometry** in the bar at the left of the CrystFEL GUI. You will be presented with a dialogue box to choose the filename for the new, @@ -784,7 +784,7 @@ data than have been included in this tutorial. Once you click **Save**, the updated geometry file should appear after a moment of calculation. The corrections applied to the detector position are reported -in the terminal::: +in the terminal:: Millepede succeeded. @@ -795,6 +795,10 @@ in the terminal::: If you process this dataset again, use this new geometry file and you should find that the indexing results are slightly better. +The command-line tool for detector geometry refinement is called +``align_detector``, and you can read more about how it works in its +`manual page <../man/align_detector.1.md>`_. + Advanced: Check for detector saturation |