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authorThomas White <taw@physics.org>2024-06-06 17:11:38 +0200
committerThomas White <taw@physics.org>2024-06-06 17:11:38 +0200
commite95b5750c3abaa390dd2655782e2e39bdbd9072a (patch)
tree8a61b3b258f0cc92f5338f5c6b0b18b4d4f83aaa /doc/articles
parente26937bd935a1e20e7a5bf6f7a7499052df4f9af (diff)
Update tutorial.rst
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@@ -762,12 +762,12 @@ Advanced: Check and optimise the detector geometry
Even if the geometry file is supposedly correct for the experiment, it's best
to check that, for example, the beam position hasn't drifted. CrystFEL
-includes a tool for refining the detector geometry, called ``align_detector``.
-This tool looks for small alterations to the geometry which improve the average
-fit between observed and calculated peak locations, for all patterns, while
-taking into account that changing the detector position will also change the
-orientation reported by the indexing procedure. The topic of detector geometry
-refinement is deep and complex, but only a basic application is needed here.
+includes a tool for refining the detector geometry. This tool looks for small
+alterations to the geometry which improve the average fit between observed and
+calculated peak locations, for all patterns, while taking into account that
+changing the detector position will also change the orientation reported by the
+indexing procedure. The topic of detector geometry refinement is deep and
+complex, but only a basic application is needed here.
Click **Refine detector geometry** in the bar at the left of the CrystFEL GUI.
You will be presented with a dialogue box to choose the filename for the new,
@@ -784,7 +784,7 @@ data than have been included in this tutorial.
Once you click **Save**, the updated geometry file should appear after a moment
of calculation. The corrections applied to the detector position are reported
-in the terminal:::
+in the terminal::
Millepede succeeded.
@@ -795,6 +795,10 @@ in the terminal:::
If you process this dataset again, use this new geometry file and you should
find that the indexing results are slightly better.
+The command-line tool for detector geometry refinement is called
+``align_detector``, and you can read more about how it works in its
+`manual page <../man/align_detector.1.md>`_.
+
Advanced: Check for detector saturation