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authorThomas White <taw@physics.org>2014-09-18 18:10:11 +0200
committerThomas White <taw@physics.org>2014-09-18 18:10:11 +0200
commit0a533227b1006b4019ea9fccd0957e8be7138f8d (patch)
treed2ff9c81c5ececd501f404388a620eaee9a57f19 /doc/man
parent0b1fa4693e4c4df54623cfeb91b3c887191236fa (diff)
Tidy up scaling/CCs a bit
Diffstat (limited to 'doc/man')
-rw-r--r--doc/man/process_hkl.115
1 files changed, 12 insertions, 3 deletions
diff --git a/doc/man/process_hkl.1 b/doc/man/process_hkl.1
index b5ff885f..330ad55e 100644
--- a/doc/man/process_hkl.1
+++ b/doc/man/process_hkl.1
@@ -69,10 +69,9 @@ Stop processing after \fIn\fR crystals have been successfully merged. The defau
.PD 0
.IP \fB--scale\fR
.PD
-Attempt to scale each pattern for best fit with the current model.
+Perform a second pass through the input, scaling each crystal's intensities to best fit the initial model.
-Scaling using process_hkl doesn't work very well: use \fBpartialator\fR if you
-need more advanced merging techniques.
+Use \fBpartialator\fR if you need more advanced merging techniques.
.PD 0
.IP \fB--no-polarisation\fR
@@ -106,6 +105,16 @@ Merge crystals only if they diffract to beyond \fIn\fR Angstroms resolution. Th
.PD
Integrate \fIn\fR nm^-1 higher than the apparent resolution limit of each individual crystal. \fIn\fR can be negative to integrate \fIlower\fR than the apparent resolution limit. The default is \fB--rescut=inf\fR, which means no resolution cutoff at all.
+.PD 0
+.IP \fB--min-cc=\fIn\fR
+.PD
+Perform a second pass through the input, merging crystals only if their correlation with the initial model is at least \fIn\fR.
+
+.PD 0
+.IP \fB--stat=\fIfilename\fR
+.PD
+Perform a second pass through the input and, for each crystal merged, write a line to \fIfilename\fR containing the filename, scale factor and correlation coefficient with the initial model. The scale factors will all be 1 unless \fB--scale\fR is also used.
+
.SH CHOICE OF POINT GROUP FOR MERGING
One of the main features of serial crystallography is that the orientations of