diff options
| author | Thomas White <taw@physics.org> | 2015-01-09 17:30:35 +0100 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2015-01-09 17:30:35 +0100 |
| commit | 15931c364e2ee96bcd545b33ef5bc0db9e52341f (patch) | |
| tree | c2709891b3760ae5f8fafc11f11d69ec65093131 /doc | |
| parent | 719ec03ff03e7cbb74eebe46aea9765b1021b9f7 (diff) | |
Update get_hkl(1)
Diffstat (limited to 'doc')
| -rw-r--r-- | doc/man/get_hkl.1 | 15 |
1 files changed, 10 insertions, 5 deletions
diff --git a/doc/man/get_hkl.1 b/doc/man/get_hkl.1 index 94c73579..24f1f8b6 100644 --- a/doc/man/get_hkl.1 +++ b/doc/man/get_hkl.1 @@ -20,6 +20,13 @@ get_hkl performs various manipulations on reflection lists. Possible manipulati .PP The input filename should be specified with \fB-i\fR \fIfilename\fR or \fB--input=\fR\fIfilename\fR. The output filename should be specified with \fB-o\fR \fIfilename\fR or \fB--output=\fR\fIfilename\fR. The symmetry of the input reflection list should be specified with \fB-y\fR \fIpointgroup\fR or \fB--symmetry=\fR\fIpointgroup\fR. Beyond these parameters, you can choose one of the manipulations described below. The behaviour if multiple manipulations are requested is deliberately left undefined: it's much clearer to perform multiple manipulations in explicit separate steps. +.PD 0 +.IP "\fB-p\fR \fIunitcell.cell\fR" +.IP "\fB-p\fR \fIunitcell.pdb\fR" +.IP \fB--pdb=\fR\fIunitcell.pdb\fR +.PD +Specify the name of the file containing unit cell information, in PDB or CrystFEL format. + .SH EXPANDING REFLECTIONS INTO A POINT GROUP OF LOWER SYMMETRY .PD 0 .IP "\fB-e\fR \fIpointgroup\fR" @@ -48,7 +55,6 @@ Add either 10% flat random noise (with \fB--noise\fR) or generate Poisson noise .PD See \fB--poisson\fR. - .SH REMOVING DUPLICATED REFLECTIONS .PD 0 .IP \fB--trim-centrics\fR @@ -76,12 +82,11 @@ The intensities of the reflections will be multiplied by their symmetric multipl In the first form, reflections with d (=lamba/2*sin(theta)) < \fIn\fR will be removed. In the second form, anisotropic truncation will be performed with separate resolution limits \fIn1\fR, \fIn2\fR and \fIn3\fR along a*, b* and c* respectively. You must also specify \fB-p\fR or \fB--pdb\fR. +.SH REINDEXING REFLECTIONS .PD 0 -.IP "\fB-p\fR \fIunitcell.cell\fR" -.IP "\fB-p\fR \fIunitcell.pdb\fR" -.IP \fB--pdb=\fR\fIunitcell.pdb\fR +.IP \fB--reindex=\fIop\fR .PD -Specify the name of the file containing unit cell information, in PDB or CrystFEL format. +Reindex the reflections according to \fIop\fR. Example: \fB--reindex=k,h,-l\fR. .SH AUTHOR This page was written by Thomas White. |