Rearrange quaternion declarations so that gtk-doc can cope

The utils file contains two gtk-doc sections, "utils" and "quaternion",
with a change of section halfway through.  It seems that gtk-doc doesn't
like it if the declarations are all mixed together.

1 files changed, 42 insertions, 19 deletions

diff --git a/doc/reference/libcrystfel/CrystFEL-sections.txt b/doc/reference/libcrystfel/CrystFEL-sections.txt
index d58c5725..3968dd5d 100644
--- a/doc/reference/libcrystfel/CrystFEL-sections.txt
+++ b/doc/reference/libcrystfel/CrystFEL-sections.txt
@@ -8,6 +8,8 @@ reflist_new
 reflist_free
 reflection_new
 reflection_free
+reflist_add_notes
+reflist_get_notes
 <SUBSECTION>
 add_refl
 add_refl_to_list
@@ -18,7 +20,6 @@ next_refl
 find_refl
 next_found_refl
 <SUBSECTION>
-get_excitation_error
 get_detector_pos
 get_panel
 get_partiality
@@ -77,6 +78,7 @@ copy_reflist
 find_equiv_in_list
 resolution_limits
 max_intensity
+reflist_add_command_and_version
 </SECTION>
 
 <SECTION>
@@ -151,32 +153,32 @@ solve_svd
 AssplodeFlag
 C_VACUO
 ELECTRON_CHARGE
-ERROR
-J_to_eV
 PLANCK
-STATUS
 THOMSON_LENGTH
 assplode
-biggest
-check_prefix
 chomp
-deg2rad
-eV_to_J
 gaussian_noise
-safe_basename
 progress_bar
-rad2deg
-is_odd
 poisson_noise
 notrail
+random_flat
+flat_noise
+show_matrix
+STATUS
+ERROR
+J_to_eV
+eV_to_J
+biggest
 smallest
+check_prefix
+safe_basename
+deg2rad
+rad2deg
+is_odd
 ph_en_to_lambda
 ph_lambda_to_en
 ph_eV_to_lambda
 ph_lambda_to_eV
-random_flat
-flat_noise
-show_matrix
 likely
 unlikely
 UNUSED
@@ -218,6 +220,20 @@ ImageFeatureList
 SpectrumType
 sample
 <SUBSECTION>
+imagefile
+imagefile_close
+imagefile_copy_fields
+imagefile_field_list
+imagefile_get_hdfile
+imagefile_get_type
+imagefile_open
+imagefile_read
+imagefile_read_simple
+<SUBSECTION>
+new_imagefile_field_list
+add_imagefile_field
+free_imagefile_field_list
+<SUBSECTION>
 image_add_feature
 image_feature_closest
 image_reflection_closest
@@ -268,10 +284,11 @@ INDEXING_DEFAULTS_ASDF
 INDEXING_DEFAULTS_FELIX
 INDEXING_METHOD_MASK
 INDEXING_CONTROL_FLAGS
-build_indexer_list
+setup_indexing
 cleanup_indexing
-prepare_indexing
+get_indm_from_string
 index_pattern
+index_pattern_2
 indexer_str
 dirax_prepare
 run_dirax
@@ -314,6 +331,7 @@ describe_symmetry
 symmetry_name
 set_symmetry_name
 get_matrix_name
+pointgroup_warning
 is_centrosymmetric
 is_centric
 </SECTION>
@@ -351,15 +369,14 @@ rigid_group
 rg_collection
 <SUBSECTION>
 copy_geom
-fill_in_values
+fill_in_adu
 free_detector_geometry
 get_detector_geometry
 get_detector_geometry_2
 write_detector_geometry
 write_detector_geometry_2
-find_panel
+panel_number
 find_panel_by_name
-find_panel_number
 simple_geometry
 record_image
 get_pixel_extents
@@ -378,6 +395,7 @@ rigid_group_is_in_collection
 single_panel_data_source
 find_rigid_group_collection_by_name
 detector_has_clen_references
+adjust_centering_for_rail
 </SECTION>
 
 <SECTION>
@@ -466,6 +484,7 @@ crystal_get_resolution_limit
 crystal_get_user_flag
 crystal_get_num_implausible_reflections
 crystal_get_notes
+crystal_get_det_shift
 crystal_set_cell
 crystal_set_image
 crystal_set_mosaicity
@@ -479,6 +498,7 @@ crystal_set_user_flag
 crystal_set_num_implausible_reflections
 crystal_set_notes
 crystal_add_notes
+crystal_set_det_shift
 </SECTION>
 
 <SECTION>
@@ -500,7 +520,9 @@ y_gradient
 <FILE>peaks</FILE>
 peak_sanity_check
 search_peaks
+search_peaks_peakfinder8
 make_BgMask
+peakfinder8
 validate_peaks
 sort_peaks
 </SECTION>
@@ -557,6 +579,7 @@ close_stream
 read_chunk
 read_chunk_2
 write_chunk
+write_chunk_2
 rewind_stream
 is_stream
 write_command