diff options
| author | Thomas White <taw@physics.org> | 2016-08-10 12:09:33 +0200 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2016-08-10 12:09:33 +0200 |
| commit | dd5d51821a47a822a3c707143ff3979e566cfbbb (patch) | |
| tree | 801edd7e95df6e93ae7d1319171c024e8e047bd5 /doc | |
| parent | 838283a04af3338799acdd5eba79ce3b3042635a (diff) | |
Allow peak table location to be given in geometry file
Diffstat (limited to 'doc')
| -rw-r--r-- | doc/man/crystfel_geometry.5 | 4 | ||||
| -rw-r--r-- | doc/reference/libcrystfel/CrystFEL-sections.txt | 1 |
2 files changed, 5 insertions, 0 deletions
diff --git a/doc/man/crystfel_geometry.5 b/doc/man/crystfel_geometry.5 index 7588bde6..ed3b6a68 100644 --- a/doc/man/crystfel_geometry.5 +++ b/doc/man/crystfel_geometry.5 @@ -285,6 +285,10 @@ the second value in the data block to the second event in the file, etc. See als Sometimes the photon energy value recorded in an HDF5 file differs from the true photon energy value by a multiplication factor. This property defines a correction factor that is applied by the CrystFEL programs. The photon energy value read from a file is multiplied by the value of this property if the property is defined in the geometry file. +.SH PEAK INFO LOCATION + +Finally, the geometry file can include information about where to look in the HDF5 or CXI files for the table of peak positions. CrystFEL can use these peak locations for indexing. Simply include \fBpeak_info_location\fR = \fIlocation\fR, where \fIlocation\fR could be something like /processing/hitfinder/peakinfo. A peak location given on the indexamajig command line, e.g. \fB--hdf5-peaks=/some/location\fR, has priority over the location in the geometry file. If neither the geometry file nor the command line specify a location, the default is \fB/processing/hitfinder/peakinfo\fR when \fB--peaks=hdf5\fR is used, and \fB/entry_1/result_1\fR when \fB--peaks=cxi\fR is used. + .SH AUTHOR This page was written by Thomas White and Valerio Mariani. diff --git a/doc/reference/libcrystfel/CrystFEL-sections.txt b/doc/reference/libcrystfel/CrystFEL-sections.txt index 57f508c4..4cd922d2 100644 --- a/doc/reference/libcrystfel/CrystFEL-sections.txt +++ b/doc/reference/libcrystfel/CrystFEL-sections.txt @@ -354,6 +354,7 @@ copy_geom fill_in_values free_detector_geometry get_detector_geometry +get_detector_geometry_2 write_detector_geometry write_detector_geometry_2 find_panel |