diff options
| author | Thomas White <taw@physics.org> | 2023-12-19 16:30:31 +0100 |
|---|---|---|
| committer | Thomas White <taw@physics.org> | 2024-02-06 16:59:34 +0100 |
| commit | ed473b7f099e949f189dcd41d69cfb33d945705a (patch) | |
| tree | 4407af629e13d1168b3b1bfa0e0f04e4944a092a /julia/alignment-test.jl | |
| parent | 1d9460ed7876112aa229cff5fc4062402f78c169 (diff) | |
Add plot routine for alignment test
Diffstat (limited to 'julia/alignment-test.jl')
| -rw-r--r-- | julia/alignment-test.jl | 35 |
1 files changed, 31 insertions, 4 deletions
diff --git a/julia/alignment-test.jl b/julia/alignment-test.jl index aecd3435..84e0f65d 100644 --- a/julia/alignment-test.jl +++ b/julia/alignment-test.jl @@ -1,5 +1,6 @@ using CrystFEL using Random +using Plots # "Simulate" a diffraction pattern from the reflections function sketch_pattern(image, cr) @@ -20,7 +21,7 @@ function simulate_and_index(cell, image_true, dtempl_moved, mille, n) indexer = Indexer("asdf", dtempl_moved, cell, retry=false, multilattice=false, refine=true) - for _ in 1:n + for i in 1:n cr = Crystal(rotatecell(cell)) peaklist = sketch_pattern(image_true, cr) @@ -29,7 +30,11 @@ function simulate_and_index(cell, image_true, dtempl_moved, mille, n) image_moved.peaklist = peaklist index(image_moved, indexer, mille=mille) - print(".") + if i % 100 == 0 + print("*") + else + print(".") + end end println("") @@ -41,5 +46,27 @@ dtempl_true = loaddatatemplate("julia/alignment-test.geom") image_true = Image(dtempl_true) cell = UnitCell(MonoclinicLattice, PrimitiveCell, 123, 45, 80, 90, 97, 90) dtempl_moved = loaddatatemplate("julia/alignment-test-moved.geom") -mille = Mille("mille.dat") -simulate_and_index(cell, image_true, dtempl_moved, mille, 10) + + +function plotresiduals(filename) + + l = @layout([q0 q1; q2 q3]) + a = collect(Iterators.flatten(t)) + + function ploth(n, offs, label) + histogram(map(x->x.residual,filter(x->in(n, keys(x.globalgradients)), a[offs:3:end])), label=label) + end + + q0 = ploth(101, 1, "q0") + q1 = ploth(201, 1, "q1") + q2 = ploth(301, 1, "q2") + q3 = ploth(401, 1, "q3") + plot(q0, q1, q2, q3, layout=l, plot_title="Fast scan residual") + + #q0 = ploth(102, 2, "q0") + #q1 = ploth(202, 2, "q1") + #q2 = ploth(302, 2, "q2") + #q3 = ploth(402, 2, "q3") + #plot(q0, q1, q2, q3, layout=l, plot_title="Slow scan residual", reuse=false) + +end |