PinkIndexer: Don't use ImageFeature->rx,ry,rz

This brings it up to date after e7cf3911104f.

1 files changed, 9 insertions, 6 deletions

diff --git a/libcrystfel/src/indexers/pinkindexer.c b/libcrystfel/src/indexers/pinkindexer.c
index 69905c35..03442764 100644
--- a/libcrystfel/src/indexers/pinkindexer.c
+++ b/libcrystfel/src/indexers/pinkindexer.c
@@ -104,15 +104,18 @@ int run_pinkIndexer(struct image *image, void *ipriv)
 	}
 	reciprocalPeaks_1_per_A->peakCount = 0;
 	for (int i = 0; i < peakCountMax && i < MAX_PEAK_COUNT_FOR_INDEXER; i++) {
+
 		struct imagefeature *f;
+		double r[3];
+
 		f = image_get_feature(image->features, i);
-		if (f == NULL) {
-			continue;
-		}
+		if ( f == NULL ) continue;
 
-		reciprocalPeaks_1_per_A->coordinates_x[reciprocalPeaks_1_per_A->peakCount] = f->rz * 1e-10;
-		reciprocalPeaks_1_per_A->coordinates_y[reciprocalPeaks_1_per_A->peakCount] = f->rx * 1e-10;
-		reciprocalPeaks_1_per_A->coordinates_z[reciprocalPeaks_1_per_A->peakCount] = f->ry * 1e-10;
+		detgeom_transform_coords(&image->detgeom->panels[f->pn],
+		                         f->fs, f->ss, image->lambda, r);
+		reciprocalPeaks_1_per_A->coordinates_x[reciprocalPeaks_1_per_A->peakCount] = r[2] * 1e-10;
+		reciprocalPeaks_1_per_A->coordinates_y[reciprocalPeaks_1_per_A->peakCount] = r[0] * 1e-10;
+		reciprocalPeaks_1_per_A->coordinates_z[reciprocalPeaks_1_per_A->peakCount] = r[1] * 1e-10;
 		intensities[reciprocalPeaks_1_per_A->peakCount] = (float) (f->intensity);
 		reciprocalPeaks_1_per_A->peakCount++;
 	}