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authorThomas White <taw@physics.org>2018-04-24 16:43:40 +0200
committerThomas White <taw@physics.org>2018-04-24 16:43:40 +0200
commit9d57a73df4c5f905428923339620046b212f4bdb (patch)
tree142c049a1abec8a4fbf40653868a89563a44a820 /libcrystfel
parent8f0d9b1419dd2fc14b561cfdd5ef639966436328 (diff)
Read audit information from stream
Diffstat (limited to 'libcrystfel')
-rw-r--r--libcrystfel/src/stream.c66
-rw-r--r--libcrystfel/src/stream.h5
2 files changed, 69 insertions, 2 deletions
diff --git a/libcrystfel/src/stream.c b/libcrystfel/src/stream.c
index d7d997cf..db6c6199 100644
--- a/libcrystfel/src/stream.c
+++ b/libcrystfel/src/stream.c
@@ -65,6 +65,7 @@ struct _stream
int major_version;
int minor_version;
+ char *audit_info;
long long int ln;
@@ -1335,6 +1336,64 @@ void write_stream_header(FILE *ofh, int argc, char *argv[])
}
+char *stream_audit_info(Stream *st)
+{
+ if ( st->audit_info == NULL ) return NULL;
+ return strdup(st->audit_info);
+}
+
+
+static void read_audit_lines(Stream *st)
+{
+ int done = 0;
+ size_t len = 0;
+ int first = 1;
+
+ st->audit_info = malloc(4096);
+ if ( st->audit_info == NULL ) {
+ ERROR("Failed to allocate memory for audit information\n");
+ return;
+ }
+
+ /* Read lines from stream until one of them starts with "-----",
+ * then rewind to the start of that line */
+ do {
+
+ char line[1024];
+ char *rval;
+ long pos;
+
+ pos = ftell(st->fh);
+
+ rval = fgets(line, 1023, st->fh);
+ if ( rval == NULL ) {
+ ERROR("Failed to read stream audit info.\n");
+ close_stream(st);
+ return;
+ }
+
+ if ( strncmp(line, "-----", 5) == 0 ) {
+ fseek(st->fh, pos, SEEK_SET);
+ done = 1;
+ } else {
+ chomp(line);
+ len += strlen(line);
+ if ( len > 4090 ) {
+ ERROR("Too much audit information.\n");
+ return;
+ } else {
+ if ( !first ) {
+ strcat(st->audit_info, "\n");
+ }
+ first = 0;
+ strcat(st->audit_info, line);
+ }
+ }
+
+ } while ( !done );
+}
+
+
Stream *open_stream_for_read(const char *filename)
{
Stream *st;
@@ -1342,6 +1401,7 @@ Stream *open_stream_for_read(const char *filename)
st = malloc(sizeof(struct _stream));
if ( st == NULL ) return NULL;
st->old_indexers = 0;
+ st->audit_info = NULL;
if ( strcmp(filename, "-") == 0 ) {
st->fh = stdin;
@@ -1384,6 +1444,8 @@ Stream *open_stream_for_read(const char *filename)
st->ln = 1;
+ read_audit_lines(st);
+
return st;
}
@@ -1409,6 +1471,7 @@ Stream *open_stream_fd_for_write(int fd)
st = malloc(sizeof(struct _stream));
if ( st == NULL ) return NULL;
st->old_indexers = 0;
+ st->audit_info = NULL;
st->fh = fdopen(fd, "w");
if ( st->fh == NULL ) {
@@ -1459,6 +1522,7 @@ Stream *open_stream_for_write_3(const char *filename,
st = malloc(sizeof(struct _stream));
if ( st == NULL ) return NULL;
st->old_indexers = 0;
+ st->audit_info = NULL;
st->fh = fopen(filename, "w");
if ( st->fh == NULL ) {
@@ -1511,6 +1575,7 @@ Stream *open_stream_for_write_2(const char *filename,
st = malloc(sizeof(struct _stream));
if ( st == NULL ) return NULL;
st->old_indexers = 0;
+ st->audit_info = NULL;
st->fh = fopen(filename, "w");
if ( st->fh == NULL ) {
@@ -1577,6 +1642,7 @@ int get_stream_fd(Stream *st)
void close_stream(Stream *st)
{
+ free(st->audit_info);
fclose(st->fh);
free(st);
}
diff --git a/libcrystfel/src/stream.h b/libcrystfel/src/stream.h
index 2ed7b050..b50da832 100644
--- a/libcrystfel/src/stream.h
+++ b/libcrystfel/src/stream.h
@@ -3,11 +3,11 @@
*
* Stream tools
*
- * Copyright © 2013-2017 Deutsches Elektronen-Synchrotron DESY,
+ * Copyright © 2013-2018 Deutsches Elektronen-Synchrotron DESY,
* a research centre of the Helmholtz Association.
*
* Authors:
- * 2010-2017 Thomas White <taw@physics.org>
+ * 2010-2018 Thomas White <taw@physics.org>
* 2014 Valerio Mariani
* 2011 Andrew Aquila
*
@@ -121,6 +121,7 @@ extern void write_command(Stream *st, int argc, char *argv[]);
extern void write_geometry_file(Stream *st, const char *geom_filename);
extern int rewind_stream(Stream *st);
extern int is_stream(const char *filename);
+extern char *stream_audit_info(Stream *st);
#ifdef __cplusplus
}