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-rw-r--r--libcrystfel/src/index.c23
1 files changed, 23 insertions, 0 deletions
diff --git a/libcrystfel/src/index.c b/libcrystfel/src/index.c
index 5a1673c3..a3479a6c 100644
--- a/libcrystfel/src/index.c
+++ b/libcrystfel/src/index.c
@@ -423,6 +423,29 @@ IndexingPrivate *setup_indexing(const char *method_list, UnitCell *cell,
if ( ipriv->engine_private[i] == NULL ) return NULL;
+ if ( methods[i] & INDEXING_PINKINDEXER ) {
+ if ( n > 1 ) {
+ ERROR("WARNING: Using PinkIndexer at the same "
+ "time as other indexers is not "
+ "recommended.\n");
+ }
+
+ if ( flags & INDEXING_CHECK_PEAKS ) {
+ ERROR("WARNING: Setting --no-check-peaks "
+ "because PinkIndexer is in use.\n");
+ }
+ flags |= INDEXING_CHECK_PEAKS;
+ flags ^= INDEXING_CHECK_PEAKS;
+
+ if ( flags & INDEXING_REFINE ) {
+ ERROR("WARNING: Setting --no-refine because "
+ "PinkIndexer is in use.\n");
+ }
+ flags |= INDEXING_REFINE;
+ flags ^= INDEXING_REFINE;
+ }
+
+
for ( j=0; j<i; j++ ) {
if ( methods[i] == methods[j] ) {
ERROR("Duplicate indexing method.\n");