diff options
Diffstat (limited to 'src/indexamajig.c')
| -rw-r--r-- | src/indexamajig.c | 23 |
1 files changed, 13 insertions, 10 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index 28a7bf85..f48fac17 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -152,16 +152,17 @@ static void show_help(const char *s) " --temp-dir=<path> Put the temporary folder under <path>.\n" "\n" "\nOptions you probably won't need:\n\n" -" --no-check-prefix Don't attempt to correct the --prefix.\n" -" --no-use-saturated During the initial peak search, reject\n" -" peaks which contain pixels above max_adu.\n" -" --no-revalidate Don't re-integrate and check HDF5 peaks for\n" -" validity.\n" -" --no-peaks-in-stream Do not record peak search results in the stream.\n" -" --no-refls-in-stream Do not record integrated reflections in the stream.\n" -" --int-diag=<cond> Show debugging information about reflections.\n" -" --no-refine Skip the prediction refinement step.\n" -" --profile Show timing data for performance monitoring.\n" +" --no-check-prefix Don't attempt to correct the --prefix.\n" +" --no-use-saturated During the initial peak search, reject\n" +" peaks which contain pixels above max_adu.\n" +" --no-revalidate Don't re-integrate and check HDF5 peaks for\n" +" validity.\n" +" --no-peaks-in-stream Do not record peak search results in the stream.\n" +" --no-refls-in-stream Do not record integrated reflections in the stream.\n" +" --int-diag=<cond> Show debugging information about reflections.\n" +" --no-refine Skip the prediction refinement step.\n" +" --profile Show timing data for performance monitoring.\n" +" --no-half-pixel-shift Don't offset the HDF5 peak locations by 0.5 px.\n" "\nLow-level options for the felix indexer:\n\n" " --felix-options Change the default arguments passed to the indexer.\n" " Given as a list of comma separated list of \n" @@ -243,6 +244,7 @@ int main(int argc, char *argv[]) iargs.peaks = PEAK_ZAEF; iargs.beam = &beam; iargs.hdf5_peak_path = NULL; + iargs.half_pixel_shift = 1; iargs.copyme = NULL; iargs.pk_inn = -1.0; iargs.pk_mid = -1.0; @@ -297,6 +299,7 @@ int main(int argc, char *argv[]) {"check-hdf5-snr", 0, &iargs.check_hdf5_snr, 1}, {"no-refine", 0, &no_refine, 1}, {"profile", 0, &iargs.profile, 1}, + {"no-half-pixel-shift",0, &iargs.half_pixel_shift, 0}, /* Long-only options which don't actually do anything */ {"no-sat-corr", 0, &iargs.satcorr, 0}, |