diff options
Diffstat (limited to 'src')
| -rw-r--r-- | src/indexamajig.c | 9 | ||||
| -rw-r--r-- | src/peaks.c | 2 |
2 files changed, 9 insertions, 2 deletions
diff --git a/src/indexamajig.c b/src/indexamajig.c index c7108fee..67073b89 100644 --- a/src/indexamajig.c +++ b/src/indexamajig.c @@ -31,6 +31,7 @@ #include "diffraction.h" #include "detector.h" #include "sfac.h" +#include "filters.h" static void show_help(const char *s) @@ -53,6 +54,8 @@ static void show_help(const char *s) " --near-bragg Output a list of reflection intensities to stdout.\n" " --simulate Simulate the diffraction pattern using the indexed\n" " unit cell.\n" +" --clean-image Perform common-mode noise subtraction and\n" +" background removal on images before proceeding.\n" "\n"); } @@ -70,6 +73,7 @@ int main(int argc, char *argv[]) int config_nearbragg = 0; int config_writedrx = 0; int config_simulate = 0; + int config_clean = 0; IndexingMethod indm; char *indm_str = NULL; @@ -83,6 +87,7 @@ int main(int argc, char *argv[]) {"write-drx", 0, &config_writedrx, 1}, {"indexing", 1, NULL, 'z'}, {"simulate", 0, &config_simulate, 1}, + {"clean-image", 0, &config_clean, 1}, {0, 0, NULL, 0} }; @@ -175,6 +180,10 @@ int main(int argc, char *argv[]) hdf5_read(hdfile, &image); + if ( config_clean ) { + clean_image(&image); + } + /* Perform 'fine' peak search */ search_peaks(&image); diff --git a/src/peaks.c b/src/peaks.c index 5a95dd17..31de2a79 100644 --- a/src/peaks.c +++ b/src/peaks.c @@ -318,8 +318,6 @@ void search_peaks(struct image *image) } image->features = image_feature_list_new(); - clean_image(image); - for ( x=1; x<image->width-1; x++ ) { for ( y=1; y<image->height-1; y++ ) { |