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2018-10-08partialator: Add missing manual entry for --no-deltacchalfThomas White
2018-08-10Fix crystfel_geometry manual page againThomas White
2018-08-10Remove old untruths from crystfel_geometry manual pageThomas White
2018-07-26partialator: Add --min-resThomas White
2018-07-26partialator: Add missing documentation for --no-BscaleThomas White
2018-06-20Finish removing "selector"Thomas White
2018-06-18Add interface to XGANDALF indexerYaroslav Gevorkov
2018-05-30Use only one min-snr optionThomas White
2018-05-30Changed parameter window-radius -> local-bg-radiusYaroslav Gevorkov
2018-05-30Adapted doc to min-sig -> min-snr changeYaroslav Gevorkov
2018-05-24Update authorship and copyright datesThomas White
2018-05-24Tweak wording in manualThomas White
2018-05-24Add "peakfinder9"Yaroslav Gevorkov
2018-05-17Merge branch 'tom/cmake'Thomas White
2018-05-17This is CrystFEL 0.7.00.7.0Thomas White
2018-05-17Update reference docsThomas White
2018-05-17Update copyright datesThomas White
2018-05-17Update manual pagesThomas White
2018-03-28Add gtk-doc stuffThomas White
This is really horrible and doesn't work 100%. Replace with something else ASAP
2018-03-12Remove autotoolsThomas White
2018-02-27Add --force-bandwidth and --force-radiusThomas White
2018-02-27Update manual pageThomas White
2018-02-27partialator: Add -w and --operator optionsThomas White
2018-02-27partialator: Tidy up old log files, and add --no-logsThomas White
2018-02-27indexamajig: Add --overpredictThomas White
2018-02-08Changed the naming of felix options and variables to make them more obvious.Kenneth R. Beyerlein
2017-12-12indexamajig: Add --serial-offsetThomas White
2017-10-27Merge branch 'tom/simpler_felix'Thomas White
2017-10-19Add read_reflections_2() to APIThomas White
New version for reading the symmetry as well
2017-10-19Remove read_reflections_from_file() from APIThomas White
See c0ce8fb4 for the rationale behind this.
2017-10-12indexamajig: Simplify Felix optionsThomas White
2017-10-12Remove write_reflections_to_file() from APIThomas White
It's there because it used to be used to write the reflections into the stream. Therefore there was a need for a function to write a bare list of reflections to a file, with no headers. Since then, the stream and merged reflection file formats have diverged, so there's no use for this other than to confuse people.
2017-10-02indexamajig(1): Add --temp-dirThomas White
2017-10-02indexamajig: Add missing documentation for --check-peaksThomas White
2017-09-21Group the options in indexamajig(1) according to processing stageThomas White
2017-09-21Update man page for new indexing optionsThomas White
2017-09-15hdfsee(1): Document --rigid-groupsThomas White
2017-07-24This is CrystFEL 0.6.30.6.3Thomas White
2017-07-24Update docsThomas White
2017-07-20indexamajig(1): Give default values for TakeTwo optionsThomas White
2017-07-07Documentation for TakeTwo indexamajig optionsThomas White
2017-07-05Update docsThomas White
2017-07-05Rearrange quaternion declarations so that gtk-doc can copeThomas White
The utils file contains two gtk-doc sections, "utils" and "quaternion", with a change of section halfway through. It seems that gtk-doc doesn't like it if the declarations are all mixed together.
2017-06-27indexamajig: Add --no-non-hits-in-streamThomas White
2017-03-31Offset peak locations from HDF5 or CXI files by 0.5,0.5Thomas White
CrystFEL considers all peak locations to be distances from the corner of the detector panel, in pixel units, consistent with its description of detector geometry. In contrast, Cheetah considers the peak locations to be pixel indices in the data array. Therefore, a half-pixel offset is needed when importing the peak lists. For users who need the old behaviour, this commit adds a new option indexamajig --no-half-pixel-shift to deactivate this offset.
2017-03-24Merge branch 'valerio/peakfinder8'Thomas White
2017-03-13Added information about max_num_peaks to documentationValerio Mariani
2017-03-10Added peakfinder8 information to the indexamajig man pageValerio Mariani
2017-03-08compare_hkl: Fix combination of sigma(I) values for d1sig and d2sigThomas White
2017-03-08compare_hkl: Fix documentationThomas White
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