CrystFEL - Data processing for serial crystallography

Age	Commit message (Collapse)	Author
2024-10-28	peakfinder8: Disable max-res cutoff by default	Thomas White
	This changes the behaviour of peakfinder8 such that --max-res=0 disables the high-resolution cutoff completely. It then sets this value as the default for indexamajig and in the GUI. When peakfinder8 was first created, 1200 pixels was a generous cutoff. These days, we have many detectors that are much bigger and the default value for --max-res seems to create confusion.
2024-09-13	peakfinder8: Don't call srand(0)	Thomas White
	It was an attempt to make the random behaviour reproducible, but unfortunately it affects the whole program. Including the frame selection in the GUI!
2024-02-06	Peak search algorithms should not mutate image structure	Thomas White
	This changes all the peak search procedures into pure functions that return a new ImageFeatureList. This takes the management of image->features out of the hands of the peak search routines, and into the calling code's responsibility. In turn, this allows a load of stuff to become const.
2024-02-06	Use libcrystfel memory allocation routines everywhere	Thomas White

2024-02-06	image_add_feature: Remove "image" argument	Thomas White
	It hasn't been needed for ages.
2022-10-05	peakfinder8: Allocate big structures on heap instead of stack	Alexandra Tolstikova
	Fixes Valgrind errors and segfault with certain geometries
2022-09-22	Add fast mode for peakfinder8	Alexandra Tolstikova

2022-06-09	Remove some unused variables	Thomas White

2021-04-27	Rename libcrystfel's config.h to libcrystfel-config.h	Thomas White
	This removes the big potential for confusion, which has happened several times (see e.g. 095cbebaf6). It also fixes in-tree builds with CMake (but seriously, always use out-of-tree builds). Fixes #2.
2021-03-05	Mass update of copyright dates in source code comments	Thomas White

2020-07-29	Convert peakfinder8 to use new API	Thomas White

2020-07-29	ImageFeatureList: Store panel number, not pointer	Thomas White
	This makes the conversion to DataTemplate/detgeom MUCH easier.
2020-01-10	Mass update of copyright dates	Thomas White

2019-05-14	Remove image.num_peaks and num_saturated_peaks	Thomas White
	These values were inconsistently set by different parts of the code, e.g. different peak search methods. num_saturated_peaks was even set during final integration. Now, the peak count is taken from the ImageFeatureList, so it's authoritative.
2019-05-07	Update all source code comments to Doxygen format	Thomas White

2018-10-30	peakfinder8: Fix some use-after-free errors	Thomas White

2018-06-12	peakfinder8: Check peak is actually within panel	Thomas White
	From Oleksandr Yefanov <oleksandr.yefanov@desy.de>
2018-06-12	peakfinder8: do not subtract constant value to avoid negative weights.	Keitaro Yamashita

2018-04-26	Use max and mix float values to initialize variables	Valerio Mariani

2018-04-25	peakfinder8: Initialise lthreshold	Thomas White

2018-04-25	Formatting fussiness	Thomas White

2017-07-06	Update to peakfinder8, with bug fixed and new functionality. Code synced ↵	Valerio Mariani
	with OnDA and Oleksandr's programs
2017-04-13	Add half-pixel offset for peakfinder8	Thomas White
	Like zaef, the pixel indices need to be converted to geometrical coordinates. This increases the indexing rate by about 5% in my test.
2017-03-24	Mostly fussiness	Thomas White

2017-03-22	Completely revamped implementation of peakfinder8	Valerio Mariani

2017-03-13	Added management of max_num_peaks per image instead of per panel	Valerio Mariani

2017-03-13	Added saturated peak management to peakfinder8	Valerio Mariani

2017-03-11	Fixed some more bugs reported by Yaroslav	Valerio Mariani

2017-03-10	Fixed a couple of bugs reported by Tom	Valerio Mariani

2017-03-10	Peakfinder8 in CrystFEL. Same results as Anton's Cheetah implementation	Valerio Mariani