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<SECTION>
<FILE>reflist</FILE>
RefList
Reflection
RefListIterator
<SUBSECTION>
reflist_new
reflist_free
reflection_new
reflection_free
<SUBSECTION>
add_refl
add_refl_to_list
<SUBSECTION>
first_refl
next_refl
<SUBSECTION>
find_refl
next_found_refl
<SUBSECTION>
get_excitation_error
get_detector_pos
get_partiality
get_indices
get_symmetric_indices
get_intensity
get_partial
get_scalable
get_refinable
get_redundancy
get_esd_intensity
get_phase
get_temp1
get_temp2
<SUBSECTION>
set_detector_pos
set_partial
set_intensity
set_scalable
set_refinable
set_redundancy
set_esd_intensity
set_phase
set_symmetric_indices
set_temp1
set_temp2
<SUBSECTION>
copy_data
num_reflections
tree_depth
lock_reflection
unlock_reflection
</SECTION>
<SECTION>
<FILE>reflist-utils</FILE>
write_reflist
write_reflections_to_file
read_reflections
read_reflections_from_file
asymmetric_indices
res_cutoff
check_list_symmetry
copy_reflist
find_equiv_in_list
</SECTION>
<SECTION>
<FILE>unitcell</FILE>
UnitCell
LatticeType
UnitCellTransformation
<SUBSECTION>
cell_new
cell_new_from_cell
cell_new_from_direct_axes
cell_new_from_parameters
cell_new_from_reciprocal_axes
cell_free
<SUBSECTION>
cell_get_cartesian
cell_get_parameters
cell_get_pointgroup
cell_get_reciprocal
cell_get_centering
cell_get_lattice_type
cell_get_unique_axis
<SUBSECTION>
cell_set_cartesian
cell_set_cartesian_a
cell_set_cartesian_b
cell_set_cartesian_c
cell_set_parameters
cell_set_pointgroup
cell_set_reciprocal
cell_set_centering
cell_set_lattice_type
cell_set_unique_axis
<SUBSECTION>
cell_transform
cell_transform_inverse
tfn_combine
tfn_identity
tfn_from_intmat
tfn_inverse
tfn_print
tfn_vector
tfn_free
<SUBSECTION>
cell_rep
</SECTION>
<SECTION>
<FILE>cell-utils</FILE>
cell_rotate
rotate_cell
cell_print
resolution
match_cell
match_cell_ab
cell_is_sensible
validate_cell
uncenter_cell
bravais_lattice
right_handed
str_lattice
forbidden_reflection
load_cell_from_pdb
</SECTION>
<SECTION>
<FILE>utils</FILE>
show_matrix_eqn
AssplodeFlag
C_VACUO
ELECTRON_CHARGE
ERROR
J_to_eV
PLANCK
STATUS
THOMSON_LENGTH
assplode
biggest
check_prefix
chomp
deg2rad
eV_to_J
gaussian_noise
safe_basename
progress_bar
rad2deg
is_odd
poisson_noise
notrail
smallest
ph_en_to_lambda
ph_lambda_to_en
</SECTION>
<SECTION>
<FILE>quaternion</FILE>
quaternion
<SUBSECTION>
quaternion_modulus
normalise_quaternion
random_quaternion
quaternion_valid
quat_rot
</SECTION>
<SECTION>
<FILE>image</FILE>
image
ImageFeatureList
image_add_feature
image_feature_closest
image_feature_count
image_feature_list_free
image_feature_list_new
image_get_feature
image_remove_feature
</SECTION>
<SECTION>
<FILE>thread-pool</FILE>
TPGetTaskFunc
TPWorkFunc
TPFinalFunc
<SUBSECTION>
run_threads
</SECTION>
<SECTION>
<FILE>statistics</FILE>
stat_pearson_f_ignore
stat_pearson_f_zero
stat_pearson_i
stat_r1_i
stat_r1_ignore
stat_r1_zero
stat_r2
stat_rdiff_ignore
stat_rdiff_intensity
stat_rdiff_zero
stat_scale_intensity
</SECTION>
<SECTION>
<FILE>indexing</FILE>
IndexingMethod
IndexingPrivate
MAX_CELL_CANDIDATES
build_indexer_list
cleanup_indexing
prepare_indexing
index_pattern
run_dirax
run_mosflm
map_all_peaks
</SECTION>
<SECTION>
<FILE>symmetry</FILE>
SymOpList
SymOpMask
<SUBSECTION>
free_symoplist
num_equivs
get_pointgroup
get_equiv
special_position
get_asymm
get_ambiguities
is_subgroup
<SUBSECTION>
new_symopmask
free_symopmask
<SUBSECTION>
describe_symmetry
symmetry_name
is_centrosymmetric
</SECTION>
<SECTION>
<FILE>integer_matrix</FILE>
IntegerMatrix
<SUBSECTION>
intmat_new
intmat_copy
intmat_free
<SUBSECTION>
intmat_get
intmat_set
<SUBSECTION>
intmat_intmat_mult
intmat_intvec_mult
intmat_det
intmat_inverse
<SUBSECTION>
intmat_equals
intmat_is_identity
intmat_is_inversion
<SUBSECTION>
intmat_print
</SECTION>
<SECTION>
<FILE>detector</FILE>
copy_geom
fill_in_values
free_detector_geometry
get_detector_geometry
write_detector_geometry
find_panel
find_panel_by_name
find_panel_number
simple_geometry
record_image
get_pixel_extents
get_q
get_q_for_panel
get_tt
smallest_q
reverse_2d_mapping
largest_q
</SECTION>
<SECTION>
<FILE>hdf5-file</FILE>
hdf5_read
hdf5_write
hdfile
hdfile_close
hdfile_get_image_binned
hdfile_get_string_value
hdfile_open
hdfile_read_group
hdfile_set_first_image
hdfile_set_image
</SECTION>
<SECTION>
<FILE>stream</FILE>
parse_stream_flags
read_chunk
write_chunk
write_stream_header
skip_some_files
is_stream
get_value
count_patterns
</SECTION>
<SECTION>
<FILE>render</FILE>
render_get_colour_scale
render_panels
render_scale
render_tiff_fp
render_tiff_int16
</SECTION>
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