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/*
* hdf5-file.h
*
* Read/write HDF5 data files
*
* Copyright © 2012-2020 Deutsches Elektronen-Synchrotron DESY,
* a research centre of the Helmholtz Association.
*
* Authors:
* 2009-2017 Thomas White <taw@physics.org>
* 2014 Valerio Mariani
*
* This file is part of CrystFEL.
*
* CrystFEL is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* CrystFEL is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CrystFEL. If not, see <http://www.gnu.org/licenses/>.
*
*/
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#ifndef HDF5_H
#define HDF5_H
struct event_list;
#include <stdint.h>
#include <hdf5.h>
#include "image.h"
#include "events.h"
struct hdfile;
struct copy_hdf5_field;
#include "image.h"
#include "events.h"
#ifdef __cplusplus
extern "C" {
#endif
/**
* \file hdf5-file.h
* HDF5 abstraction layer
*/
extern int hdf5_write(const char *filename, const void *data,
int width, int height, int type);
extern int hdf5_write_image(const char *filename, const struct image *image,
char *element);
extern int hdf5_read(struct hdfile *f, struct image *image,
const char* element, int satcorr);
extern int hdf5_read2(struct hdfile *f, struct image *image,
struct event *ev, int satcorr);
extern int check_path_existence(hid_t fh, const char *path);
extern struct hdfile *hdfile_open(const char *filename);
int hdfile_set_image(struct hdfile *f, const char *path);
extern int16_t *hdfile_get_image_binned(struct hdfile *hdfile,
int binning, int16_t *maxp);
extern char **hdfile_read_group(struct hdfile *f, int *n, const char *parent,
int **p_is_group, int **p_is_image);
extern int hdfile_set_first_image(struct hdfile *f, const char *group);
extern void hdfile_close(struct hdfile *f);
extern int get_peaks(struct image *image, struct hdfile *f, const char *p);
extern int get_peaks_2(struct image *image, struct hdfile *f, const char *p,
int half_pixel_shift);
extern int get_peaks_cxi(struct image *image, struct hdfile *f, const char *p,
struct filename_plus_event *fpe);
extern int get_peaks_cxi_2(struct image *image, struct hdfile *f, const char *p,
struct filename_plus_event *fpe,
int half_pixel_shift);
extern struct copy_hdf5_field *new_copy_hdf5_field_list(void);
extern void free_copy_hdf5_field_list(struct copy_hdf5_field *f);
extern void copy_hdf5_fields(struct hdfile *f,
const struct copy_hdf5_field *copyme,
FILE *fh, struct event *ev);
extern void add_copy_hdf5_field(struct copy_hdf5_field *copyme,
const char *name);
extern struct event_list *fill_event_list(struct hdfile* hdfile,
struct detector* det);
extern int hdfile_get_value(struct hdfile *f, const char *name,
struct event *ev, void *val, hid_t memtype);
extern int hdfile_is_scalar(struct hdfile *f, const char *name, int verbose);
extern char *hdfile_get_string_value(struct hdfile *f, const char *name,
struct event *ev);
#ifdef __cplusplus
}
#endif
#endif /* HDF5_H */
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