aboutsummaryrefslogtreecommitdiff
path: root/libcrystfel/src/spectrum.h
blob: d0fcc9c1548aefe580e9581e5ca34358ed093b34 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
/*
 * spectrum.h
 *
 * A class representing a radiation spectrum
 *
 * Copyright © 2019-2021 Deutsches Elektronen-Synchrotron DESY,
 *                       a research centre of the Helmholtz Association.
 *
 * Authors:
 *   2019 Thomas White <taw@physics.org>
 *
 * This file is part of CrystFEL.
 *
 * CrystFEL is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * CrystFEL is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with CrystFEL.  If not, see <http://www.gnu.org/licenses/>.
 *
 */

#ifndef SPECTRUM_H
#define SPECTRUM_H

#include <gsl/gsl_rng.h>

/**
 * \file spectrum.h
 * Data structure representing a radiation spectrum
 */

/**
 * This data structure is opaque.  You must use the available accessor functions
 * to read and write its contents.
 **/
typedef struct _spectrum Spectrum;


/**
 * Structure representing a Gaussian distribution of spectral density.
 */
struct gaussian
{
	double kcen;    /**< k value at centre of Gaussian (in 1/m) */
	double sigma;   /**< Standard deviation of Gaussian (in 1/m) */
	double area;    /**< Area under Gaussian (fraction of radiation) */
};


#ifdef __cplusplus
extern "C" {
#endif

/* Alloc/free */
extern Spectrum *spectrum_new(void);
extern void spectrum_free(Spectrum *s);
extern Spectrum *spectrum_load(const char *filename);

/* Representation as Gaussians */
extern void spectrum_set_gaussians(Spectrum *s, struct gaussian *gs,
                                   int n_gauss);
extern int spectrum_get_num_gaussians(Spectrum *s);
extern struct gaussian spectrum_get_gaussian(Spectrum *s, int n);

/* Representation as PDF */
extern void spectrum_set_pdf(Spectrum *s, double *kcens, double *heights,
                             int nbins);
extern void spectrum_get_range(Spectrum *s, double *kmin, double *kmax);
extern double spectrum_get_density_at_k(Spectrum *s, double k);

/* Generation of spectra */
extern Spectrum *spectrum_generate_tophat(double wavelength, double bandwidth);
extern Spectrum *spectrum_generate_gaussian(double wavelength, double bandwidth);
extern Spectrum *spectrum_generate_sase(double wavelength, double bandwidth,
                                        double spike_width, gsl_rng *rng);
extern Spectrum *spectrum_generate_twocolour(double wavelength, double bandwidth,
                                             double separation);

#ifdef __cplusplus
}
#endif

#endif	/* SPECTRUM_H */